View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15713_low_15 (Length: 238)
Name: NF15713_low_15
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_low_15 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 32552794 - 32553015
Alignment:
| Q |
17 |
agaagatattgttgattatgtcgttgatagcaatatgagaggagagttcatagccaagtatcacagagcttgttttgaatctcttttaatagctgagttt |
116 |
Q |
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| T |
32552794 |
agaagatattgttgattatgtcgttgatagcaatatgagaggagagttcatagccaagtatcacagagcttgttttgaatctcttttaatagctgagttt |
32552893 |
T |
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| Q |
117 |
ggtgaaaatgtcatggatgaattattctcaaggtttgcaaagctaattgcacaattcattgagataaagtcaccagattttttcaatattgtgttgttta |
216 |
Q |
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| T |
32552894 |
ggtgaaaatgtcatggatgaattattctcaaggtttgcaaagctaattgcacaattcattgagataaagtcaccagattttttcaatattgtgttgttta |
32552993 |
T |
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| Q |
217 |
tgactaagtgtccttaaacaag |
238 |
Q |
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| T |
32552994 |
tgaataagtgtccttaaacaag |
32553015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 32549477 - 32549694
Alignment:
| Q |
17 |
agaagatattgttgattatgtcgttgatagcaatatgagaggagagttcatagccaagtatcacagagcttgttttgaatctcttttaatagctgagttt |
116 |
Q |
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| T |
32549477 |
agaagatattgttgatcacgtcgttgatagtaaaatgagagtagagttcatagccaagtatgacagagcttttttggaatctattttaatagctcagttt |
32549576 |
T |
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| Q |
117 |
ggtgaaaatgtcatggatgaattattctcaaggtttgcaaagctaattgcacaattcattgagataaagtcaccagattttttcaatattgtgttgttta |
216 |
Q |
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| T |
32549577 |
ggtgaagatatcatggatgaattgttctcaaggtttgcaaagcaaatcgcacaattcatggagttaaagtcaccatatgttttcaatattacgttgttta |
32549676 |
T |
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| Q |
217 |
tgactaagtgtccttaaa |
234 |
Q |
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| T |
32549677 |
tgaccaagtgtcgttaaa |
32549694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 32547098 - 32547259
Alignment:
| Q |
21 |
gatattgttgattatgtcgttgatagcaatatgagaggagagttcatagccaagtatcacagagcttgttttgaatctcttttaatagctgagtttggtg |
120 |
Q |
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| T |
32547098 |
gatattgttgattatgttgaagatagcaaaatgagaggggaattcatagccaagtatcacagagctgtttatgaacctcttttaatagccgggtttggag |
32547197 |
T |
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| Q |
121 |
aaaatgtcatggatgaattattctcaaggtttgcaaagctaattgcacaattcattgagata |
182 |
Q |
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| T |
32547198 |
aaaacatcatggatgaattgttctcaaggtttgcaaagctgatagctcaactcattgagata |
32547259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 32648161 - 32647998
Alignment:
| Q |
19 |
aagatattgttgattatgtcgttgatagcaatatgagaggagagttcatagccaagtatcacagagcttgttttgaatctcttttaatagctgagtttgg |
118 |
Q |
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| T |
32648161 |
aagataatgttgattatgttgtagatagcaaaatgagaggggaattcatagccaagtatcacagagctgtttatgaacctcttttaatagctggatttgg |
32648062 |
T |
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| Q |
119 |
tgaaaatgtcatggatgaattattctcaaggtttgcaaagctaattgcacaattcattgagata |
182 |
Q |
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| T |
32648061 |
agaaaacattatggatgaattgttctcaaggtttgcaaagctgatagctcaactcattgagata |
32647998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 27879116 - 27879256
Alignment:
| Q |
39 |
gttgatagcaatatgagaggagagttcatagccaagtatcacagagcttgttttgaatctcttttaatagctgagtttggtgaaaatgtcatggatgaat |
138 |
Q |
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| T |
27879116 |
gttgatagcaaaatgagaggggagcttatagccaagtaccacagagctgtttttgaacctcttttaatagacgggtttggtgaaaatatcatggatgaat |
27879215 |
T |
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| Q |
139 |
tattctcaaggtttgcaaagctaattgcacaattcattgag |
179 |
Q |
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| T |
27879216 |
tgttctcaagatttgcaaagctgcttgcacagctcattgag |
27879256 |
T |
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