View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15713_low_3 (Length: 517)
Name: NF15713_low_3
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 39291075 - 39291564
Alignment:
| Q |
18 |
cttagatcatgacttaataggactttttacttctgcagaagtcggaaaacttcctaagcctttgagtttggtggagaagagaaggaagaaacttcaaata |
117 |
Q |
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| T |
39291075 |
cttagatcatgacttaataggactttttacttct-------tcggaaaacttcccgagcctttgagtttggtggagaagagaaggaagaaacttcaaata |
39291167 |
T |
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| Q |
118 |
tatgcgagatagtcataattataaacatagataactaaaaaacgaactgtcattatggacacattgcgcagagggagtaaaccttggaaggggtgcaatt |
217 |
Q |
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| T |
39291168 |
tatgcgagatagtcataattataaacatagataactaaaaaacgaactgtcattatggacacattgcgcagagggagtaaaccttggaaggggtgcaatc |
39291267 |
T |
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| Q |
218 |
gctttgatacgcgcattggtaccattcggagtagttacagaggataaacgtaatcataacataatccaaaacgtttcaaatctttacgaagttaacaata |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
39291268 |
gctttgatacgcgcattggtaccattcgaagtagttacagaggataaacgtaatcataacataatccaaa-cgtttcaaatctttgcgaagttaacaata |
39291366 |
T |
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| Q |
318 |
actgcttggtttgctcgaatacgtttcgtttcttatatttattctgatctaaaaggtcaatttcaaaaatcatttgaaaagtaacatttaggggcaccag |
417 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39291367 |
acttcttggtttgctcgaatacgtttcgtttcttatatttattctgatctaaaaggtcaatttcaaaaatcatttgaaaagtaacatttaggggcaccag |
39291466 |
T |
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| Q |
418 |
ttacacacaaatgttttcgagcaagttaggctcatcttccttaaagaccaaaaagaaatgattttgttgtcggagctcgaaagtcgttatttcaaata |
515 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39291467 |
ttacacacaaatgttttcgagtgagttaggctcatcttccttaaagaccaaaaagaaatgattttgttgtcggagctcgaaagtcgttatttcaaata |
39291564 |
T |
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