View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15713_low_4 (Length: 517)
Name: NF15713_low_4
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 9842292 - 9842778
Alignment:
| Q |
17 |
catggttaccattgattgccacaagattggattcacttacctaatattcagtctttatttcattataatttgaatgtatctttgttacattgcagatggg |
116 |
Q |
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| T |
9842292 |
catggttaccattgattgccacaagattggattcacttacctaatattcagtctttatttcattataatttgaatgtatctttgttacattgcagatggg |
9842391 |
T |
|
| Q |
117 |
tttgtaatattcttaatttgttgctttaaactgaatgctaatatgatactgtttgaaatcttctgttccattgctctgttatcatcatgtgcaaagattg |
216 |
Q |
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| T |
9842392 |
tttgtaatattcttaatttgttgctttaaactaaatgctaatatgatactgtttgaaatcttctgttccgttgctttgtt---atcatgtgcaaagattg |
9842488 |
T |
|
| Q |
217 |
atgaaagattgttgtaattccaaaagtcatttgctgtaattttttataatacttttgaagtcaaatccgattac--nnnnnnnncttcttcttgcgatta |
314 |
Q |
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| T |
9842489 |
atgaaagattgttgtaattccaagagtcattttctgcaattttttacaatacttttgaagtcaaatacgattactttttttcttcttcttcttgcgatta |
9842588 |
T |
|
| Q |
315 |
gaaaccgactatagtataaaaaagaacagcatgtttttattctttatctttgttaaaaaattttgttcctataaacatttgttgaatagttacatacagt |
414 |
Q |
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| T |
9842589 |
gaaaccgactatagtataaaaaagaacagtatgtttttattctttatctttgttaaaaattcttgttcctataaacatttgttgaatagttacatacagt |
9842688 |
T |
|
| Q |
415 |
acgtcctttctcttcaaaatgcatacattgttctaatattggtgaaagttgaacttttatgtatcaagccataactctaatatattattc |
504 |
Q |
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| T |
9842689 |
acgtcctttctcttcaaaatgcatacattgttctaatattggtgaaagttgtacttgtatgtatcaagccataactctaatatattattc |
9842778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 58 - 321
Target Start/End: Original strand, 9853278 - 9853541
Alignment:
| Q |
58 |
taatattcagtctttatttcattataatttgaatgtatctttgttacattgcagatgggtttgtaatattcttaatttgttgctttaaactgaatgctaa |
157 |
Q |
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| T |
9853278 |
taatattcagtctttatttcattataatttgaatgtatctttgttacattgcagatgggtttgtaatattcttaatttgttgctttaaactgaatgctaa |
9853377 |
T |
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| Q |
158 |
tatgatactgtttgaaatcttctgttccattgctctgttatcatcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcatttgctgtaatt |
257 |
Q |
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| T |
9853378 |
tatgatactgtttgaaatcttctgttccattgctttgttatcatcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcattttctgtaatt |
9853477 |
T |
|
| Q |
258 |
ttttataatacttttgaagtcaaatccgattacnnnnnnnncttcttcttgcgattagaaaccg |
321 |
Q |
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| T |
9853478 |
ttttataatacttttgaagtcaaatccgattacttttttttcttcttcttgcgattagaaaccg |
9853541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 11772731 - 11772810
Alignment:
| Q |
117 |
tttgtaatattcttaatttgttgctttaaactgaatgctaatatgatactgtttgaaatcttctgttccattgctctgtta |
197 |
Q |
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||||||||||||||||||||| ||||| || |||||| | |||||||||||||| |||| ||||||| || |||| ||||| |
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| T |
11772731 |
tttgtaatattcttaatttgtagcttt-aagtgaatgttcatatgatactgtttcaaattttctgtttcactgctttgtta |
11772810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 11772596 - 11772670
Alignment:
| Q |
27 |
attgattgccacaagattggattcacttacctaatattcagtctttatttcattataatttgaatgtatctttgt |
101 |
Q |
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|||||| |||||||||||| ||| |||| |||||||||||| | |||| ||||| ||||||||| |||||||| |
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| T |
11772596 |
attgatagccacaagattgtatttacttggctaatattcagtttgcattttattatcatttgaatgcatctttgt |
11772670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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