View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15713_low_5 (Length: 478)
Name: NF15713_low_5
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 19253352 - 19253066
Alignment:
| Q |
15 |
tcactaaaatcatccaacccaaaataccattttccctctccaacccaactttctttttgtttggcctaccaaggaaatgacaattgtttgaatcctatgt |
114 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19253352 |
tcactaaaatcatccaacccaaaataacattttccctctccaacccaactttctttttgtttggcctaccaaggaaatgacaattgtttgaatcctatgt |
19253253 |
T |
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| Q |
115 |
taaggtatataaataatccacaccataccctccataaaaatccacatataaattccatgactcttttgatgagattgaaagatgtgtacttgatttgtga |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19253252 |
taaggtatataaataatccacaccgtaccctccataaaaatccacatataaattccatgactcttttgatgagattgaaagatgtgtacttgatttgtga |
19253153 |
T |
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| Q |
215 |
ctacatatccaaaaccctaaaattaattgacctagnnnnnnntttctttacacatcttcatgtgtctcttgctttgcattaatactc |
301 |
Q |
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| T |
19253152 |
ctacatatccaaaaccctaaaattaattgacctagccccccctttctttacacatcttcatgtgtctcttgctttgcattaatactc |
19253066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 368 - 468
Target Start/End: Complemental strand, 19252999 - 19252899
Alignment:
| Q |
368 |
atcccataaacaacacaaacatcacttttcacttctcattcctctgtttttctctgttttagaaatgaagagaaccgttattatcttcttctttcttctc |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19252999 |
atcccataaacaacacaaacatcacttttcacttctcattcctctgtttttctctgttttagaaatgaagagaaccgttattatcttcttctttcttctc |
19252900 |
T |
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| Q |
468 |
t |
468 |
Q |
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| T |
19252899 |
t |
19252899 |
T |
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