View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15714_high_10 (Length: 239)

Name: NF15714_high_10
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15714_high_10
NF15714_high_10
[»] chr4 (17 HSPs)
chr4 (12-222)||(37991606-37991816)
chr4 (11-99)||(5474053-5474142)
chr4 (12-99)||(25684141-25684229)
chr4 (14-96)||(6807038-6807121)
chr4 (17-102)||(32570643-32570728)
chr4 (12-99)||(32882529-32882617)
chr4 (12-99)||(54178690-54178778)
chr4 (26-99)||(6882579-6882653)
chr4 (15-96)||(30168150-30168232)
chr4 (12-96)||(52324018-52324103)
chr4 (12-99)||(17281822-17281910)
chr4 (12-99)||(17370324-17370412)
chr4 (23-110)||(19627868-19627956)
chr4 (17-100)||(25607738-25607821)
chr4 (12-99)||(48207348-48207436)
chr4 (60-100)||(48262880-48262920)
chr4 (12-101)||(3690781-3690872)
[»] chr3 (10 HSPs)
chr3 (12-101)||(51996466-51996556)
chr3 (12-99)||(24397654-24397742)
chr3 (144-203)||(48817588-48817647)
chr3 (12-99)||(20199618-20199706)
chr3 (12-99)||(29815398-29815486)
chr3 (12-96)||(29384952-29385037)
chr3 (12-98)||(4521318-4521405)
chr3 (12-76)||(15804531-15804596)
chr3 (12-99)||(39540942-39541029)
chr3 (12-99)||(47175739-47175827)
[»] chr8 (14 HSPs)
chr8 (12-95)||(30777325-30777408)
chr8 (12-99)||(37218871-37218959)
chr8 (12-99)||(44636969-44637057)
chr8 (12-99)||(5982232-5982320)
chr8 (12-99)||(11360217-11360305)
chr8 (14-99)||(40154703-40154789)
chr8 (22-101)||(34520851-34520930)
chr8 (12-95)||(36569713-36569797)
chr8 (12-95)||(41674754-41674838)
chr8 (12-98)||(5215372-5215459)
chr8 (26-95)||(12632958-12633028)
chr8 (12-99)||(34057877-34057965)
chr8 (12-99)||(43332015-43332102)
chr8 (12-99)||(44309837-44309924)
[»] chr7 (9 HSPs)
chr7 (12-99)||(42584031-42584119)
chr7 (12-99)||(22904540-22904628)
chr7 (12-99)||(2932624-2932712)
chr7 (12-99)||(3228514-3228602)
chr7 (12-99)||(22639414-22639502)
chr7 (12-95)||(11640564-11640648)
chr7 (12-95)||(24149037-24149121)
chr7 (60-102)||(8577970-8578012)
chr7 (12-95)||(27427180-27427264)
[»] chr2 (10 HSPs)
chr2 (12-103)||(7069464-7069556)
chr2 (12-99)||(8504076-8504164)
chr2 (12-99)||(41184757-41184845)
chr2 (12-98)||(28318090-28318177)
chr2 (12-102)||(42640896-42640986)
chr2 (22-99)||(2283214-2283292)
chr2 (17-102)||(38073152-38073237)
chr2 (12-104)||(43359373-43359466)
chr2 (22-81)||(12002625-12002684)
chr2 (12-99)||(7366772-7366860)
[»] chr5 (14 HSPs)
chr5 (12-99)||(13956631-13956717)
chr5 (14-99)||(16602408-16602494)
chr5 (12-99)||(2011103-2011191)
chr5 (144-203)||(6378689-6378747)
chr5 (12-98)||(13593330-13593417)
chr5 (12-98)||(29665869-29665956)
chr5 (14-99)||(10118291-10118377)
chr5 (12-99)||(329011-329099)
chr5 (12-99)||(19239064-19239152)
chr5 (53-102)||(1445771-1445821)
chr5 (53-99)||(24431848-24431895)
chr5 (53-99)||(9499714-9499760)
chr5 (12-50)||(16729992-16730030)
chr5 (12-99)||(12336485-12336573)
[»] chr1 (21 HSPs)
chr1 (12-101)||(34410996-34411086)
chr1 (12-99)||(17203018-17203106)
chr1 (12-99)||(39084758-39084846)
chr1 (12-95)||(49982509-49982593)
chr1 (12-99)||(51873322-51873410)
chr1 (144-203)||(26068195-26068254)
chr1 (144-203)||(28975616-28975674)
chr1 (17-95)||(38862436-38862515)
chr1 (12-101)||(14077599-14077689)
chr1 (23-99)||(46918664-46918740)
chr1 (12-99)||(24677601-24677689)
chr1 (12-95)||(46283043-46283127)
chr1 (12-99)||(47458798-47458886)
chr1 (17-100)||(33986148-33986231)
chr1 (12-99)||(39871433-39871521)
chr1 (12-95)||(41568714-41568798)
chr1 (144-203)||(21274682-21274741)
chr1 (53-99)||(24511890-24511937)
chr1 (26-95)||(35533925-35533995)
chr1 (60-100)||(32912259-32912299)
chr1 (12-99)||(50533952-50534040)
[»] chr6 (9 HSPs)
chr6 (12-99)||(926813-926901)
chr6 (17-99)||(229859-229942)
chr6 (12-101)||(3953948-3954038)
chr6 (53-99)||(11273432-11273478)
chr6 (26-99)||(21998898-21998972)
chr6 (12-99)||(6295649-6295736)
chr6 (12-99)||(6302459-6302546)
chr6 (20-99)||(14002446-14002526)
chr6 (12-99)||(24151172-24151260)
[»] scaffold0325 (1 HSPs)
scaffold0325 (15-99)||(1262-1347)
[»] scaffold0648 (1 HSPs)
scaffold0648 (12-50)||(1542-1580)
[»] scaffold0271 (1 HSPs)
scaffold0271 (12-50)||(15922-15960)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 37991816 - 37991606
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccgtaactacttatttcataaaatgatcgttagtatataaatttatgaagtaaaactaccgt 111  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37991816 ttctcatgacatgatgttttcaaaaatataaatattgacaataactacttatttcataaaatgatcgttaatatataaatttatgaagtaaaactaccgt 37991717  T
Q  112 agaagttcccttgnnnnnnnnnnnnnnnnnnnattattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgtacaatagaa 211  Q
    |||||||||||||                   ||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||    
T  37991716 agaagttcccttgttttttttgttttgtttttattattgtttttgttggaccaatcaaaatttgccaagtcaagagtggttggaagggtgtagaatagaa 37991617  T
Q  212 ggtgtgtctat 222  Q
    |||||||||||    
T  37991616 ggtgtgtctat 37991606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 5474142 - 5474053
Alignment:
Q  11 cttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    |||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  5474142 cttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 5474053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 25684229 - 25684141
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||||||||||| |||||||||||| ||||   |||  |||||||||||||||||||| ||| | |||||||||||||||    
T  25684229 ttctcatgagatgatgttttctaaaatataaataatgacaaataataacttatttcataaaatgatcattaatttataaatttatgaag 25684141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 6807121 - 6807038
Alignment:
Q  14 ctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatg 96  Q
    ||||||| ||| ||||||| |||||||||| ||||||   |||||||||||||||||||||||| |||| | ||||||||||||    
T  6807121 ctcatgagatggtgttttctaaaatataaacattgacaaataactacttatttcataaaatgattgttaatttataaatttatg 6807038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 32570643 - 32570728
Alignment:
Q  17 atgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagtaa 102  Q
    |||| ||||||||||| ||||||||| |||||||   || ||| |||||||||||||||||||||| | ||||||||||||||||||    
T  32570643 atgaaatgatgttttctaaaatataa-tattgacaaatacctatttatttcataaaatgatcgttaatttataaatttatgaagtaa 32570728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 32882529 - 32882617
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    |||||| || ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  32882529 ttctcaagagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 32882617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 54178690 - 54178778
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||| ||||||||||| ||| | |||||||||||||||    
T  54178690 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttaataaaatgatcattaatttataaatttatgaag 54178778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 6882653 - 6882579
Alignment:
Q  26 tgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  6882653 tgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 6882579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 30168232 - 30168150
Alignment:
Q  15 tcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatg 96  Q
    |||||| ||| ||||||| |||||||||| ||||||   |||||||||||||||||||||||| |||| | ||||||| ||||    
T  30168232 tcatgagatggtgttttctaaaatataaacattgacaaataactacttatttcataaaatgattgttaatttataaatatatg 30168150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 52324103 - 52324018
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatg 96  Q
    ||||||||| ||| ||||||  |||||||||| ||||||   |||||||||||||||||||||||| || | | ||||||||||||    
T  52324103 ttctcatgagatggtgttttttaaaatataaagattgacaaataactacttatttcataaaatgattgtaaatttataaatttatg 52324018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 17281910 - 17281822
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||| ||| ||| ||||||| |||||||||||| ||||   |||| |||||| ||||||||||||| ||| | |||||||||||||||    
T  17281910 ttctcctgagatggtgttttctaaaatataaataatgacaaataacaacttatctcataaaatgatcattaatttataaatttatgaag 17281822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 17370412 - 17370324
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||| ||| ||| ||||||| |||||||||||| ||||   |||| |||||| ||||||||||||| ||| | |||||||||||||||    
T  17370412 ttctcctgagatggtgttttctaaaatataaataatgacaaataacaacttatctcataaaatgatcattaatttataaatttatgaag 17370324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 19627868 - 19627956
Alignment:
Q  23 tgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttatgaagtaaaactaccg 110  Q
    |||||||||| |||||||||||||||||   |||||| |||||| ||||||||  ||||    |||||||||||||||||||| |||||    
T  19627868 tgatgttttctaaaatataaatattgacaaataactaattatttaataaaatggacgttcaattataaatttatgaagtaaaagtaccg 19627956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 25607821 - 25607738
Alignment:
Q  17 atgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagt 100  Q
    |||| ||||||||||| ||||||||| |||||||   || ||| |||||||||||||| ||||||| | ||||||||||||||||    
T  25607821 atgaaatgatgttttctaaaatataa-tattgacaaatacctatttatttcataaaataatcgttaatttataaatttatgaagt 25607738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 48207348 - 48207436
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||| ||| ||| ||||||| |||||||||||| ||||   |||| |||||| ||||||||||||| ||| | |||||||||||||||    
T  48207348 ttctcctgagatggtgttttctaaaatataaataatgacaaataacaacttatctcataaaatgatcattaatttataaatttatgaag 48207436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 48262880 - 48262920
Alignment:
Q  60 ttatttcataaaatgatcgttagtatataaatttatgaagt 100  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  48262880 ttatttcataaaatgatcgttaatttataaatttatgaagt 48262920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 3690781 - 3690872
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgtt-agtatataaatttatgaagta 101  Q
    ||||||||  ||||||||||| |||||||| |||| |||   |||| |||||||||||||||| |||||| | | |||||||||||||||||    
T  3690781 ttctcatgggatgatgttttctaaaatatagatatcgacaaataacaacttatttcataaaataatcgttaaatttataaatttatgaagta 3690872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 51996556 - 51996466
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttatgaagta 101  Q
    ||||||||| ||| |||||||||||||||||| |||||| | |||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  51996556 ttctcatgagatggtgttttcaaaaatataaacattgacacataactacttatttcataaaatgattgttaatttataaatttatgtagta 51996466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 24397654 - 24397742
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||||| | ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  24397654 ttctcatgatacggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 24397742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 48817647 - 48817588
Alignment:
Q  144 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 203  Q
    |||||||||||| |||||||||| |||||||||||| |||  ||||||||||||||||||    
T  48817647 attattgcttttattggaccaataaaaatttgccaaatcagaagtggtgggaagggtgta 48817588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 20199618 - 20199706
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||| | ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  20199618 ttctcataagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatccttaatttataaatttatgaag 20199706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 29815398 - 29815486
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||||||||||| |||||||||||||||||   |||| ||||| || ||||||||||  ||| | |||||||||||||||    
T  29815398 ttctcatgagatgatgttttctaaaatataaatattgacaaataacaacttaattaataaaatgataattaatttataaatttatgaag 29815486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 29384952 - 29385037
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatg 96  Q
    ||||||||| ||| | ||||| |||||||||| ||||||   ||||||||||||| |||||||||| |||| | ||||||||||||    
T  29384952 ttctcatgagatggtattttctaaaatataaacattgacaaataactacttattttataaaatgattgttaatttataaatttatg 29385037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 4521405 - 4521318
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaa 98  Q
    ||||| ||| ||| ||||||| |||||||||||| ||||   |||| |||||| ||||||||||||| ||| | ||||||||||||||    
T  4521405 ttctcctgagatggtgttttctaaaatataaataatgacaaataacaacttatctcataaaatgatcattaatttataaatttatgaa 4521318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 15804531 - 15804596
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgat 76  Q
    |||| |||| ||||||||||| |||||||||| ||||||   |||||| |||||||||||||||||    
T  15804531 ttcttatgagatgatgttttctaaaatataaacattgacaaataactatttatttcataaaatgat 15804596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 39540942 - 39541029
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||  |||||||||||| ||||   |||| |||||||||||||||||||| ||| | ||| |||||||||||    
T  39540942 ttctcatgagatggtgttttttaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttat-aatttatgaag 39541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 47175739 - 47175827
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| | ||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | || || |||||||||    
T  47175739 ttctcatgagatggtattttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttaaaattttatgaag 47175827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 30777408 - 30777325
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccgtaactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    |||| |||| ||||||||||| |||||||||||||| ||  ||||||||||||||||||||||||||||| |  ||||||||||    
T  30777408 ttcttatgagatgatgttttctaaaatataaatattaacaataactacttatttcataaaatgatcgttaattcataaatttat 30777325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 37218871 - 37218959
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||||||||||| |||||||||||||||||   |||| ||||| |||||||||| ||| ||| | |||||||||||||||    
T  37218871 ttctcatgagatgatgttttctaaaatataaatattgacaaataacaacttaattcataaaataatcattaatttataaatttatgaag 37218959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 44637057 - 44636969
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  44637057 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 44636969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 5982320 - 5982232
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| | ||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  5982320 ttctcatgagatggtattttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 5982232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 11360305 - 11360217
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||| ||||||||||| ||| | |||||||||||||||    
T  11360305 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttattttataaaatgatcattaatttataaatttatgaag 11360217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 40154703 - 40154789
Alignment:
Q  14 ctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||| ||| ||||||| |||||||||||| ||||   |||| |||| ||||||||||||||| ||| | |||||||||||||||    
T  40154703 ctcatgagatggtgttttctaaaatataaataatgacaaataacaacttctttcataaaatgatcattaatttataaatttatgaag 40154789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 34520851 - 34520930
Alignment:
Q  22 atgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagta 101  Q
    ||||||||||| ||||||||||||||  |   ||||||||||||||| ||||||||||||| |  ||||||||||||||||    
T  34520851 atgatgttttctaaaatataaatattatcaaataactacttatttca-aaaatgatcgttaattcataaatttatgaagta 34520930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 36569797 - 36569713
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||| ||||||||||| ||| | |||||||||||    
T  36569797 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttattttataaaatgatcattaatttataaatttat 36569713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 41674754 - 41674838
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||| | ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||    
T  41674754 ttctcataagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatccttaatttataaatttat 41674838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 5215459 - 5215372
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaa 98  Q
    ||||||||  ||||||||||| |||||||| |||| |||   |||| |||||||| ||||||| ||||||| | ||||||||||||||    
T  5215459 ttctcatgggatgatgttttctaaaatatagatatcgacaaataacaacttattttataaaataatcgttaatttataaatttatgaa 5215372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 12633028 - 12632958
Alignment:
Q  26 tgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||| |||||||||| ||||||   |||||||||||||||||||||||| |||| | |||||| ||||    
T  12633028 tgttttctaaaatataaacattgacaaataactacttatttcataaaatgattgttaatttataaaattat 12632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 34057965 - 34057877
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||  ||||||  |||||||||||| ||||   |||| ||||||||||||||||| || ||| | |||||||||||||||    
T  34057965 ttctcatgagatcgtgttttttaaaatataaataatgacaaataacaacttatttcataaaatggtctttaatttataaatttatgaag 34057877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 43332015 - 43332102
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||  |||||||||||| ||||   |||| |||||||||||||||||||| ||| | ||| |||||||||||    
T  43332015 ttctcatgagatggtgttttttaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttat-aatttatgaag 43332102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 44309837 - 44309924
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||  |||||||||||| ||||   |||| |||||||||||||||||||| ||| | ||| |||||||||||    
T  44309837 ttctcatgagatggtgttttttaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttat-aatttatgaag 44309924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 42584031 - 42584119
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||||||||||| |||||||||||||||||   |||| ||||| |||||||||||||| ||| | |||||||||||||||    
T  42584031 ttctcatgagatgatgttttctaaaatataaatattgacaaataacaacttaattcataaaatgatcattaatttataaatttatgaag 42584119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 22904628 - 22904540
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||||||||||| |||||||||||| ||||   |||| | |||||||||||||||||| ||| | |||||||||||||||    
T  22904628 ttctcatgagatgatgttttctaaaatataaataatgacaaataacaatttatttcataaaatgatcattaatttataaatttatgaag 22904540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 2932712 - 2932624
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||| ||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  2932712 ttctcgtgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 2932624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 3228514 - 3228602
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||||||||||| |||||||||||| ||||   |||| | |||||||||||||| ||| ||| | |||||||||||||||    
T  3228514 ttctcatgagatgatgttttctaaaatataaataatgacaaataaccatttatttcataaaataatcattaatttataaatttatgaag 3228602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 22639502 - 22639414
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||  ||| | |||||||||||||||    
T  22639502 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgataattaatttataaatttatgaag 22639414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 11640564 - 11640648
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||| ||| ||| | |||||||||||    
T  11640564 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaataatcattaatttataaatttat 11640648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 24149037 - 24149121
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||||| || |||||||| |||||||||||| ||||   |||| |||||||||||||||| ||| ||| | |||||||||||    
T  24149037 ttctcatgagataatgttttctaaaatataaataatgacaaataacaacttatttcataaaataatcattaatttataaatttat 24149121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 8578012 - 8577970
Alignment:
Q  60 ttatttcataaaatgatcgttagtatataaatttatgaagtaa 102  Q
    |||||| ||||||||||||||| | ||||||||||||||||||    
T  8578012 ttattttataaaatgatcgttaatttataaatttatgaagtaa 8577970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 27427264 - 27427180
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||||| ||| ||||||  |||||||||||| ||||   |||| |||||||||||||||| ||| ||| | |||||||||||    
T  27427264 ttctcatgagatggtgttttttaaaatataaataatgacaaataacaacttatttcataaaattatcattaatttataaatttat 27427180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 7069464 - 7069556
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagtaaa 103  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||||||    
T  7069464 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaagtaaa 7069556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 8504164 - 8504076
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  8504164 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 8504076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 41184757 - 41184845
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||||||| ||||||| |||||||||||| | ||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  41184757 ttctcatgatatggtgttttctaaaatataaataataacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 41184845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 28318177 - 28318090
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaa 98  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | ||||||||||||||    
T  28318177 ttctcatgaaatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaa 28318090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 42640986 - 42640896
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagtaa 102  Q
    |||| |||| ||||||||||| ||||||||| |||||||   || ||| |||||||||||||||||||||| | ||||||||||||||||||    
T  42640986 ttcttatgaaatgatgttttctaaaatataa-tattgacaaatacctatttatttcataaaatgatcgttaatttataaatttatgaagtaa 42640896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 2283292 - 2283214
Alignment:
Q  22 atgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||||| |||||||||||||||||   || ||| |||||||||||||| ||||||| | |||||||||||||||    
T  2283292 atgatgttttctaaaatataaatattgacaaatagctatttatttcataaaataatcgttaatttataaatttatgaag 2283214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 38073237 - 38073152
Alignment:
Q  17 atgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagtaa 102  Q
    |||| ||||||||||| ||||||||| |||||||   || ||| |||||||||||||||||||||| | ||||||||||||||||||    
T  38073237 atgaaatgatgttttctaaaatataa-tattgacaaatatctatttatttcataaaatgatcgttaatttataaatttatgaagtaa 38073152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 43359373 - 43359466
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagtaaaa 104  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | ||||||||||| ||| ||||    
T  43359373 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttataaagcaaaa 43359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 12002625 - 12002684
Alignment:
Q  22 atgatgttttcaaaaatataaatattgaccgtaactacttatttcataaaatgatcgtta 81  Q
    ||||||||||| ||||||||||||||||   |||||  ||||||||||||||||||||||    
T  12002625 atgatgttttctaaaatataaatattgataataactctttatttcataaaatgatcgtta 12002684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 7366772 - 7366860
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| | | ||||||| |||||||||||| |||    |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  7366772 ttctcatgagacggtgttttctaaaatataaataatgataaataacaacttatttcataaaatgatcattaatttataaatttatgaag 7366860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 13956717 - 13956631
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccgtaactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||| | |||||||||| |||| |||||||||||||  ||||||||||||| ||||||||||||||| | ||||||||| |||||    
T  13956717 ttctcataagatgatgtttttaaaa-tataaatattgacaataactacttattttataaaatgatcgttaatttataaatttgtgaag 13956631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 16602494 - 16602408
Alignment:
Q  14 ctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||| ||||||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  16602494 ctcatgagatgatgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 16602408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 2011191 - 2011103
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  2011191 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 2011103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 6378689 - 6378747
Alignment:
Q  144 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 203  Q
    ||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||    
T  6378689 attattgcttttgttggaccaataaaagtttgccaagt-aagaatggtgggaagggtgta 6378747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 13593417 - 13593330
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaa 98  Q
    ||||||||| ||||||||||  |||||||||||| ||||   |||| |||||||||||||||||||| ||| | ||||||||||||||    
T  13593417 ttctcatgagatgatgttttttaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaa 13593330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 29665956 - 29665869
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaa 98  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | ||||||||||||||    
T  29665956 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatccttaatttataaatttatgaa 29665869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 10118377 - 10118291
Alignment:
Q  14 ctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  10118377 ctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 10118291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 329011 - 329099
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    |||||| || ||||||||||| |||| ||||||||||||   |||| ||||| |||||||||||||| ||| | |||||||||||||||    
T  329011 ttctcaagagatgatgttttctaaaagataaatattgacaaataacaacttaattcataaaatgatcattaatttataaatttatgaag 329099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 19239064 - 19239152
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| | ||||||||| |||||||||||| ||||   |||| |||||||||||||||||| | ||| | |||||||||||||||    
T  19239064 ttctcatgagacgatgttttctaaaatataaataatgacaaataacaacttatttcataaaatgaccattaatttataaatttatgaag 19239152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 1445821 - 1445771
Alignment:
Q  53 taactacttatttcataaaat-gatcgttagtatataaatttatgaagtaa 102  Q
    |||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  1445821 taactatttatttcataaaattgatcgttagtttataaatttatgaagtaa 1445771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 24431895 - 24431848
Alignment:
Q  53 taactacttatttcataaaat-gatcgttagtatataaatttatgaag 99  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||    
T  24431895 taactatttatttcataaaattgatcgttagtttataaatttatgaag 24431848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 9499714 - 9499760
Alignment:
Q  53 taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  9499714 taacaacttatttcataaaatgatccttaatttataaatttatgaag 9499760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 16729992 - 16730030
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac 50  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  16729992 ttcttatgaaatgatgttttcaaaaatataaatattgac 16730030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 12336485 - 12336573
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||  ||||||  |||||||||||| ||||   |||| ||||||||||||||||| || ||| | |||||||||||||||    
T  12336485 ttctcatgagatcgtgttttttaaaatataaataatgacaaataacaacttatttcataaaatggtctttaatttataaatttatgaag 12336573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 34411086 - 34410996
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagta 101  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||||    
T  34411086 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaagta 34410996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 17203018 - 17203106
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  17203018 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 17203106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 39084846 - 39084758
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  39084846 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 39084758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 49982593 - 49982509
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||||| ||| ||||||| |||||||||||||||||   || ||||||||||||||||||||| |||| | |||||||||||    
T  49982593 ttctcatgagatggtgttttctaaaatataaatattgacaaatagctacttatttcataaaatgattgttaatttataaatttat 49982509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 51873410 - 51873322
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||||||||||| |||||||||||| ||||   |||| |||||| ||||||||||||| ||| | |||||||||||||||    
T  51873410 ttctcatgagatgatgttttctaaaatataaataatgacaaataacaacttatctcataaaatgatcattaatttataaatttatgaag 51873322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 26068195 - 26068254
Alignment:
Q  144 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 203  Q
    |||||||||||| |||||||||| |||||||||||| |||  ||||||||||||||||||    
T  26068195 attattgcttttattggaccaataaaaatttgccaaatcagaagtggtgggaagggtgta 26068254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 28975674 - 28975616
Alignment:
Q  144 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 203  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||    
T  28975674 attattgcttttgttggaccaataaaagtttgccaagt-aagagtggtggaaagggtgta 28975616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 38862436 - 38862515
Alignment:
Q  17 atgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    |||| ||||||||||| |||||||||||||||||   |||||  |||||||||||||||||||||| | |||||||||||    
T  38862436 atgaaatgatgttttctaaaatataaatattgacaaataactttttatttcataaaatgatcgttaatttataaatttat 38862515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 14077599 - 14077689
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagta 101  Q
    ||||||||| ||| ||||||  |||||||||| ||||||   |||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  14077599 ttctcatgagatggtgttttttaaaatataaacattgacaaataactacttatttcataaaatgattgttaatttataaatttatgtagta 14077689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 46918664 - 46918740
Alignment:
Q  23 tgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    |||||||||| |||||||||||||||||   || || ||||||||||||||||||||||| | |||||||||||||||    
T  46918664 tgatgttttctaaaatataaatattgacaaatagct-cttatttcataaaatgatcgttaatttataaatttatgaag 46918740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 24677689 - 24677601
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| | ||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  24677689 ttctcatgagatggtattttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 24677601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 46283043 - 46283127
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||    
T  46283043 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttat 46283127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 47458798 - 47458886
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||  ||| | |||||||||||||||    
T  47458798 ttctcatgaaatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgattattaatttataaatttatgaag 47458886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 33986148 - 33986231
Alignment:
Q  17 atgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagt 100  Q
    |||| ||||||||||| ||||||||| |||||||   || ||| |||||||||||||||||||||| | ||||||||||| ||||    
T  33986148 atgaaatgatgttttctaaaatataa-tattgacaaatagctatttatttcataaaatgatcgttaatttataaatttataaagt 33986231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 39871521 - 39871433
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||  ||||||||||| |||||||||| | |||    |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  39871521 ttctcatgggatgatgttttctaaaatataaaaaatgataaataacaacttatttcataaaatgatcattactttataaatttatgaag 39871433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 41568714 - 41568798
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    |||| |||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||    
T  41568714 ttcttatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttat 41568798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 21274682 - 21274741
Alignment:
Q  144 attattgcttttgttggaccaatgaaaatttgccaagtcaagagtggtgggaagggtgta 203  Q
    |||||||||||| ||||| |||| |||||||||||| |||  ||||||||||| ||||||    
T  21274682 attattgcttttattggatcaataaaaatttgccaaatcagaagtggtgggaatggtgta 21274741  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 24511890 - 24511937
Alignment:
Q  53 taactacttatttcataaaat-gatcgttagtatataaatttatgaag 99  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||    
T  24511890 taactatttatttcataaaattgatcgttagtttataaatttatgaag 24511937  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 35533995 - 35533925
Alignment:
Q  26 tgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttat 95  Q
    ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||    
T  35533995 tgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttat 35533925  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 32912299 - 32912259
Alignment:
Q  60 ttatttcataaaatgatcgttagtatataaatttatgaagt 100  Q
    ||||||| |||||||||||||| | ||||||||||||||||    
T  32912299 ttatttcttaaaatgatcgttaatttataaatttatgaagt 32912259  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 50534040 - 50533952
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||  ||||||  |||||||||||| ||||   |||| ||||||||||||||||| || ||| | |||||||||||||||    
T  50534040 ttctcatgagatcgtgttttttaaaatataaataatgacaaataacaacttatttcataaaatggtctttaatttataaatttatgaag 50533952  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 926813 - 926901
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||  ||| | |||||||||||||||    
T  926813 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgataattaatttataaatttatgaag 926901  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 229942 - 229859
Alignment:
Q  17 atgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    |||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  229942 atgaaatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaatgatcattaatttataaatttatgaag 229859  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 3954038 - 3953948
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaagta 101  Q
    ||||||||| ||  ||||||| |||||||||| ||||||   ||||||||||||| ||||||| || |||| | |||||||||||| ||||    
T  3954038 ttctcatgagatagtgttttctaaaatataaacattgacaaataactacttattttataaaataattgttaatttataaatttatgtagta 3953948  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 11273478 - 11273432
Alignment:
Q  53 taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    |||| |||||||||||||||||||| ||| | |||||||||||||||    
T  11273478 taacaacttatttcataaaatgatctttaatttataaatttatgaag 11273432  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 21998898 - 21998972
Alignment:
Q  26 tgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||| |||||||||||| ||||   |||| |||||||| ||||||||||| ||| | |||||||||||||||    
T  21998898 tgttttctaaaatataaataatgacaaataacaacttattttataaaatgatcattaatttataaatttatgaag 21998972  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 6295649 - 6295736
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||| ||||||| ||| ||| | |||||||||||||||    
T  6295649 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttaataaaat-atcattaatttataaatttatgaag 6295736  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 6302459 - 6302546
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac-cgtaactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||| ||||||| |||||||||||| ||||   |||| |||||||| ||||||| ||| ||| | |||||||||||||||    
T  6302459 ttctcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttaataaaat-atcattaatttataaatttatgaag 6302546  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 14002526 - 14002446
Alignment:
Q  20 atatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||| ||||||| |||||||| ||| ||||   |||| |||||||||||||||| ||| ||| | |||||||||||||||    
T  14002526 atatggtgttttctaaaatatatataatgacaaataacaacttatttcataaaataatcattaatttataaatttatgaag 14002446  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 24151260 - 24151172
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    ||||||||| ||  ||||||  |||||||||||| ||||   |||| ||||||||||||||||| || ||| | |||||||||||||||    
T  24151260 ttctcatgagatcgtgttttttaaaatataaataatgacaaataacaacttatttcataaaatggtctttaatttataaatttatgaag 24151172  T

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Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 1347 - 1262
Alignment:
Q  15 tcatgatatgatgttttcaaaaatataaatattgaccg-taactacttatttcataaaatgatcgttagtatataaatttatgaag 99  Q
    |||||| ||| ||||||| |||||||||||| ||||   |||| |||||||||||||||| ||| ||| | |||||||||||||||    
T  1347 tcatgagatggtgttttctaaaatataaataatgacaaataacaacttatttcataaaataatcattaatttataaatttatgaag 1262  T

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Target: scaffold0648 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 1542 - 1580
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac 50  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  1542 ttcttatgatatgatgttttctaaaatataaatattgac 1580  T

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Target: scaffold0271 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 15922 - 15960
Alignment:
Q  12 ttctcatgatatgatgttttcaaaaatataaatattgac 50  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  15922 ttcttatgatatgatgttttctaaaatataaatattgac 15960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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