View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15714_high_3 (Length: 478)
Name: NF15714_high_3
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 6351936 - 6352393
Alignment:
| Q |
1 |
aggtgtagctaaaatgtgatggctcaggagtagggctccgtaattttgtgtgaattacttcaaataatttagaatgaatagtaatggaaagtggagtatg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6351936 |
aggtgtaactaaaatgtgatggctcaggagtagggctccgtaattttgtgtgaattacttcaaataatttagaatgaatagtaatggaaagtggagtatg |
6352035 |
T |
|
| Q |
101 |
taatcgatgtgatttaccaacacagcaagaattacaaaaaccataaagttctttactagcaattggtatattacagatggaaattacatttttgacaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6352036 |
taatcgatgtgatttaccaacacagcaagaattacaaaaaccataaagttctttactagcaattggtatattacagatggaaattacatttttgacaa-t |
6352134 |
T |
|
| Q |
201 |
tgaccattagcatggcctagctagcataccaaatggatttacttgataccaaagtagaatcatatgttgcattttattacaaatgacagaattattattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6352135 |
tgaccattagcatggcctagctagcataccaaatggatttacttgataccaaagtagaatcatagtttgcattttattacaaatgacagaattattattt |
6352234 |
T |
|
| Q |
301 |
gacgtaacgcctaaagtataaggagatgaatgcactgagagcttagtcacatggcaggaagatcctttgataacattgagatgtgagaagtatacaagcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352235 |
gacgtaacgcctaaagtataaggagatgaatgcagtgagagcttagtcacatggcaggaagatcctttgataacattgagatgtgagaagtatacaagcc |
6352334 |
T |
|
| Q |
401 |
attgcacctagggatccacgagtgtttgctttgtggcgtgtgatttcacaaacacactg |
459 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
6352335 |
attgcacctagggatccacgagcgcttgctttgttgcgtgtgatttcacaaacacactg |
6352393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University