View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_10 (Length: 351)
Name: NF15714_low_10
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 21939682 - 21939864
Alignment:
| Q |
18 |
aactttctgctatttatcttaattgttagactagtaaagttgtacccctaaaa-aagtattaaaattgtagtcatttagcaacaatctaagtaattttag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21939682 |
aactttctgctatttatcttaattgttagactagtatagttgtacccctaaaaaaagtattaaaattgtagtcatttagcaacaatctaagtaattttag |
21939781 |
T |
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| Q |
117 |
caaaaaatatattctta-nnnnnnnatcatattttactatatgtagcaaaaatatattgatccttttcaattgatatgttctc |
198 |
Q |
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| T |
21939782 |
caaaaaatatattcttattttttttatcttattttactatatgtagcaaaaatatattgatccttttcaattgatatgttctc |
21939864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 21939932 - 21940003
Alignment:
| Q |
270 |
aaaatcaacaaaattgattacattttttaattcgtgtattatttgctaagctacttctacataatacctatg |
341 |
Q |
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| T |
21939932 |
aaaatcattaaaattgattacattttttaattcgtatattatttgctaagctacttctacataatacctatg |
21940003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 45210039 - 45209991
Alignment:
| Q |
270 |
aaaatcaacaaaattgattacattttttaattcgtgtattatttgctaa |
318 |
Q |
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||||||||||||||| ||||| ||| |||||||||| |||||||||||| |
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| T |
45210039 |
aaaatcaacaaaattaattacgtttcttaattcgtgcattatttgctaa |
45209991 |
T |
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