View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_11 (Length: 325)
Name: NF15714_low_11
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 45121228 - 45121481
Alignment:
| Q |
56 |
atttgaattataccgcaaaaacaagaggcaccgactaagctcaagtgcttccaaaagttcggaacatgtcgtttcaccgattatatcactctcagaactt |
155 |
Q |
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| T |
45121228 |
atttgaattatacctcaaaaacaagaggcaccgactaagctcaagtgcttccaaaagttcggaacatgtcgtttcaccgattatatcactctcagaactt |
45121327 |
T |
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| Q |
156 |
gctgagtcccttgctttttctgcagctttctttatttggagccattccaaactggtattgtgaatgactctagcctgtttcttacaaataaaagtgtaaa |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45121328 |
gctgagtcccttgctttttctgcagctttctttatttggagccattccaaactggtattgtgaatgactctagcctgtttcttacaaataaaagtgaaaa |
45121427 |
T |
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| Q |
256 |
atgaatatgattgctacaaattacattgcggatgtcatagttgagttaagtaag |
309 |
Q |
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| T |
45121428 |
atgaatatgattgctacaaattacattgcggatgtcatagttgagttaagtaag |
45121481 |
T |
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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31774269 - 31774194
Alignment:
| Q |
1 |
aagtaaaaaacttgaattcataaacaagaaagaaacaagagaaaagcaagatagaatttgaattataccgcaaaaa |
76 |
Q |
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| T |
31774269 |
aagtaaaaaacttgaattcataaatttgaaagaaacaaaagaaaaacaagatagaagttgaattataccgcaaaaa |
31774194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 40257199 - 40257263
Alignment:
| Q |
168 |
gctttttctgcagctttctttatttggagccattccaaactggtattgtgaatgactctagcctg |
232 |
Q |
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| T |
40257199 |
gctttttctgtagcttcctttatttgttgccattctgaactggtattgtgaatgactctagcctg |
40257263 |
T |
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