View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_13 (Length: 302)
Name: NF15714_low_13
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_13 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 2410333 - 2410602
Alignment:
| Q |
18 |
ctaaaatggaatgtattaaacaaactaaggatgtccttcaagcataaaatgtgtcagaattggactaaagagagttgacaacgttaaagttcaaaatcga |
117 |
Q |
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| T |
2410333 |
ctaaaatggaatgttttaaacaaactaaggatgtccttcaagcgtaaaatgtgtcagaatcggactaaagagagttgacaatgttaaagttcaaaatcga |
2410432 |
T |
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| Q |
118 |
aaacaaaaaagaaacaagctataaaattgatgacaaacattacagaggattacaccatcaatagtgatagtcgaaaatgaaagttgtgtatctagctttc |
217 |
Q |
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| T |
2410433 |
aaacaaaaaagaaataagctataaaattgatgacaaacactacggaggattaaaccatcaatagtgatagtcaaaaacgaaagttgtgtatctagctttc |
2410532 |
T |
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| Q |
218 |
aaccctcagaaagattaaaacttaatattgtcatataaagactttaaatttttctccttatgttaaaaat |
287 |
Q |
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| T |
2410533 |
aaccataagaaagactaaaacttaatgttgtcatataaagactttaaatttttctccttctgttaaaaat |
2410602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 8821509 - 8821604
Alignment:
| Q |
190 |
gaaaatgaaagttgtgtatctagctttcaaccctcagaaagattaaaacttaatattgtcatataaagactttaaatttttctccttatgttaaaaa |
286 |
Q |
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| T |
8821509 |
gaaaataaaagttgtgtatctcgctttcaaccaccggtaagactgaaacttaattttgtcacat-acgatttcaaattttcctccttatgttgaaaa |
8821604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 148733 - 148780
Alignment:
| Q |
174 |
atcaatagtgatagtcgaaaatgaaagttgtgtatctagctttcaacc |
221 |
Q |
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| T |
148733 |
atcaatagtgatagtcgaaaacgaaagttgtttatctcgctttcaacc |
148780 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 27832219 - 27832149
Alignment:
| Q |
124 |
aaaagaaacaagctataaaattgatgacaaacattacagaggattacaccatcaatagtgatagtcgaaaa |
194 |
Q |
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| T |
27832219 |
aaaagaaacaagctaaaaaactgatgtcaaacattggagagtattaagccaccaataatgatagtcgaaaa |
27832149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 7914213 - 7914148
Alignment:
| Q |
190 |
gaaaatgaaagttgtgtatctagctttcaaccctcagaaagattaaaacttaatattgtcatataa |
255 |
Q |
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| T |
7914213 |
gaaaacgaaagttgtgtatcttgctttcaactaccagaaagactgaagcttaattttgtcatataa |
7914148 |
T |
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