View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15714_low_15 (Length: 280)

Name: NF15714_low_15
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15714_low_15
NF15714_low_15
[»] chr2 (9 HSPs)
chr2 (11-264)||(37520442-37520695)
chr2 (21-115)||(1648008-1648102)
chr2 (21-115)||(8561071-8561165)
chr2 (21-116)||(16290742-16290837)
chr2 (21-108)||(11992914-11993001)
chr2 (22-115)||(45329643-45329736)
chr2 (23-79)||(23766906-23766962)
chr2 (23-79)||(23796099-23796155)
chr2 (37-101)||(28218521-28218585)
[»] chr8 (8 HSPs)
chr8 (19-115)||(16008438-16008534)
chr8 (26-115)||(4061809-4061898)
chr8 (21-121)||(15218284-15218384)
chr8 (28-100)||(29520506-29520578)
chr8 (24-115)||(3801832-3801924)
chr8 (19-115)||(35323871-35323967)
chr8 (62-103)||(30453894-30453935)
chr8 (21-116)||(35249776-35249875)
[»] chr6 (2 HSPs)
chr6 (21-116)||(20430570-20430665)
chr6 (21-105)||(6079585-6079669)
[»] chr5 (8 HSPs)
chr5 (21-117)||(2078541-2078637)
chr5 (21-103)||(39668782-39668864)
chr5 (31-116)||(10293688-10293773)
chr5 (21-107)||(32489109-32489195)
chr5 (21-97)||(11069366-11069442)
chr5 (21-82)||(3292663-3292724)
chr5 (59-112)||(25160-25213)
chr5 (21-85)||(22703828-22703892)
[»] chr1 (17 HSPs)
chr1 (21-116)||(32079304-32079399)
chr1 (21-116)||(49350474-49350569)
chr1 (21-113)||(49527438-49527530)
chr1 (21-117)||(52920977-52921073)
chr1 (21-111)||(4001850-4001940)
chr1 (21-113)||(1290193-1290285)
chr1 (22-108)||(9599915-9600001)
chr1 (21-115)||(51850761-51850855)
chr1 (21-92)||(8670808-8670879)
chr1 (25-105)||(52815018-52815098)
chr1 (21-103)||(6985616-6985696)
chr1 (21-89)||(6039612-6039680)
chr1 (21-85)||(52463090-52463154)
chr1 (21-115)||(15424512-15424604)
chr1 (56-117)||(16538789-16538850)
chr1 (31-101)||(14732397-14732466)
chr1 (75-117)||(51444589-51444631)
[»] chr3 (6 HSPs)
chr3 (21-123)||(31566262-31566364)
chr3 (19-115)||(52136315-52136411)
chr3 (25-115)||(51450771-51450861)
chr3 (21-116)||(7023146-7023241)
chr3 (19-107)||(9256267-9256355)
chr3 (21-99)||(27215624-27215702)
[»] scaffold0245 (1 HSPs)
scaffold0245 (21-113)||(16598-16690)
[»] scaffold0279 (1 HSPs)
scaffold0279 (21-115)||(18383-18477)
[»] scaffold0024 (1 HSPs)
scaffold0024 (21-111)||(48260-48350)
[»] chr4 (6 HSPs)
chr4 (22-103)||(54529556-54529636)
chr4 (21-117)||(16000228-16000320)
chr4 (21-116)||(27453167-27453260)
chr4 (21-78)||(38475067-38475124)
chr4 (60-116)||(883570-883626)
chr4 (59-99)||(42309152-42309192)
[»] scaffold0001 (1 HSPs)
scaffold0001 (21-79)||(440120-440178)
[»] chr7 (2 HSPs)
chr7 (21-84)||(46833168-46833228)
chr7 (30-74)||(36232115-36232159)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 37520695 - 37520442
Alignment:
Q  11 ggtcggccctatgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggca 110  Q
    ||||||| | ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37520695 ggtcggcgccatgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggaccggccttggca 37520596  T
Q  111 ggattatgttatctcaaataataaggttgattttattaataagggatttagtctaacgaattagcaattgaaaaagaaaacgctaaaccaaactcaaccc 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37520595 ggattatgttatctcaaataataaggtagattttattaataagggatttagtctaacaaattagcaattgaaaaagaaaacgctaaaccaaactcaaccc 37520496  T
Q  211 atccacattgtaatgtaagctttgtcccaattttgtgtttcttgcccttaactt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37520495 atccacattgtaatgtaagctttgtcccaattttgtgtttcttgcccttaactt 37520442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 1648102 - 1648008
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1648102 atgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggaccggccttggcaggatt 1648008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 8561071 - 8561165
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  8561071 atgtcatagggattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccaggcttgggaccggccttggcaggatt 8561165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 16290837 - 16290742
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    ||||||||||||||| |||||||||||| |||||  |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  16290837 atgtcatagagattcgacaaagttttacgttggctatcgaggcctaacacaaccctttccttttacccgggcttgggaccggccttggcaggatta 16290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 11993001 - 11992914
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttgg 108  Q
    ||||||||||||||| |||||||||||  ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  11993001 atgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttacccgggcttgggaccggccttgg 11992914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 45329643 - 45329736
Alignment:
Q  22 tgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    |||||||||||||| | |||||||||| ||||| |||||| ||||||||||||||||| |||||| | |||||||| |||||||| ||| ||||    
T  45329643 tgtcatagagattcgataaagttttacgttggctgtcgagacctaacacaaccctctccttttactcaggcttggggccggccttagcatgatt 45329736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 23766906 - 23766962
Alignment:
Q  23 gtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctc 79  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  23766906 gtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctc 23766962  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 23796099 - 23796155
Alignment:
Q  23 gtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctc 79  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  23796099 gtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctc 23796155  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 28218521 - 28218585
Alignment:
Q  37 acaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccg 101  Q
    ||||| |||||| ||| |||| || |||||||||||||||||| |||||||| | || |||||||    
T  28218521 acaaaattttacgttgaccgttgaagcctaacacaaccctctccttttacccagactagggaccg 28218585  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 16008438 - 16008534
Alignment:
Q  19 ctatgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  16008438 ctatgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccaggcttgggaccggccttggcaggatt 16008534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 4061898 - 4061809
Alignment:
Q  26 atagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  4061898 atagagatttgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggtttgggaccggccttggcaggatt 4061809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 15218284 - 15218384
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggattatgtt 120  Q
    ||||||||||||||| ||||| |||||| ||| |  ||||||| ||||||||||||||| |||||||||  ||| |||||| ||||||||||||||||||    
T  15218284 atgtcatagagattcgacaaaattttacgttgactatcgaggcttaacacaaccctctccttttacccgaacttaggaccgaccttggcaggattatgtt 15218383  T
Q  121 a 121  Q
    |    
T  15218384 a 15218384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 29520578 - 29520506
Alignment:
Q  28 agagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggacc 100  Q
    |||| ||||||| |||||||| ||||  || ||||||||||||||||||||| ||||||||||||||||||||    
T  29520578 agaggttcaacagagttttacgttggttgtagaggcctaacacaaccctctccttttacccgggcttgggacc 29520506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 3801924 - 3801832
Alignment:
Q  24 tcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttaccc-gggcttgggaccggccttggcaggatt 115  Q
    ||||||||||||||||||||||||| ||||  |||||| ||||||||| ||||||| ||| |||| ||||||| ||| || |||| |||||||    
T  3801924 tcatagagattcaacaaagttttacgttggttgtcgagacctaacacagccctctcctttcacccggggcttgagactggtcttgacaggatt 3801832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 35323967 - 35323871
Alignment:
Q  19 ctatgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    ||||||||||||||||| ||||| |||||  ||||| |||||||||| || ||||| |||  ||||||| ||||||||||| | |||||| ||||||    
T  35323967 ctatgtcatagagattcgacaaaattttaagttggctgtcgaggcctgacccaaccgtcttcttttacctgggcttgggactgaccttggtaggatt 35323871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 30453894 - 30453935
Alignment:
Q  62 gcctaacacaaccctctctttttacccgggcttgggaccggc 103  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  30453894 gcctaacacaaccctctctttttatccgggcttgggaccggc 30453935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 35249875 - 35249776
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttgg----ccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    |||| |||||||||| |||||||||||  ||||    | ||||||||||| |||||||||||  |||||| ||||||||||||| | |||| ||||||||    
T  35249875 atgttatagagattcgacaaagttttatgttggttgtctgtcgaggcctatcacaaccctcttcttttacgcgggcttgggaccagtcttgacaggatta 35249776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 20430570 - 20430665
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  20430570 atgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgagcttgggaccggccttggcaggatta 20430665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 6079669 - 6079585
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggcct 105  Q
    ||||||||||||||| |||||||||||| ||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  6079669 atgtcatagagattcgacaaagttttacgttgactgtcgaggcctaacgcaaccctctccttttacccgggcttgggaccggcct 6079585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 2078541 - 2078637
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggattat 117  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  2078541 atgtcatagagattcgacaaagttttactttggctgtcgaggcctaacacaaccctctccttttatccgggcttgggaccggccttggcaggattat 2078637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 39668782 - 39668864
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggc 103  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||| | |||||||||||||||||||||||    
T  39668782 atgtcatagagattcgacaaagttttacgttggctgtcgaggactaacacaaccctcaccttttacccgggcttgggaccggc 39668864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 10293688 - 10293773
Alignment:
Q  31 gattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    ||||| |||||||||||| |||   |||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  10293688 gattcgacaaagttttacgttgcatgtcgaggcctaacacaaccctctccttttacccgagtttgggaccggccttggcaggatta 10293773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 32489195 - 32489109
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttg 107  Q
    ||||||||| ||||| |||||||||||| ||| | ||||||| |||||||||||||||| |||||| || |||||| ||||||||||    
T  32489195 atgtcatagggattcgacaaagttttacgttgactgtcgaggtctaacacaaccctctccttttactcgagcttggaaccggccttg 32489109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 11069366 - 11069442
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttggg 97  Q
    ||||||||||||||| |||||||||| | ||||  || ||||||||||||||| ||||| |||||||||||||||||    
T  11069366 atgtcatagagattcgacaaagttttgcgttggttgttgaggcctaacacaacgctctccttttacccgggcttggg 11069442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 3292724 - 3292663
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctcttt 82  Q
    ||||||||| ||||| |||||||||||  ||||| || ||||||||||||||||||||||||    
T  3292724 atgtcatagtgattcgacaaagttttatgttggctgttgaggcctaacacaaccctctcttt 3292663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 25213 - 25160
Alignment:
Q  59 gaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcagg 112  Q
    ||||||| ||||||  ||||| ||||||||||  ||||||||||||||||||||    
T  25213 gaggcctgacacaattctctccttttacccggatttgggaccggccttggcagg 25160  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 22703828 - 22703892
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctcttttta 85  Q
    |||| ||||| |||| ||||||||||   ||||| ||||||| |||||||||||||||| |||||    
T  22703828 atgttatagaaattcgacaaagttttgtgttggctgtcgaggtctaacacaaccctctcctttta 22703892  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 32079399 - 32079304
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  32079399 atgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgagaccggccttggcaggatta 32079304  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 49350474 - 49350569
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  49350474 atgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacctgggcttgggaccggccttggcaggatta 49350569  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 49527438 - 49527530
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcagga 113  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||    
T  49527438 atgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaatcctctccttttacccgagcttgggaccggccttggcagga 49527530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 52921073 - 52920977
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggattat 117  Q
    ||||||||||||||| |||||||||||  ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52921073 atgtcatagagattcgacaaagttttatgttggctgtcaaggcctaacacaaccctctccttttacccgggcttgggaccggccttggcaggattat 52920977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 4001940 - 4001850
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcag 111  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  4001940 atgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttggggccggccttggcag 4001850  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 1290193 - 1290285
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcagga 113  Q
    ||||||||||||||| | |||||||||| ||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  1290193 atgtcatagagattctaaaaagttttacgttggctgtcaaggcctgacacaaccctctttttttacccgggcttgggaccggccttggcagga 1290285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 9600001 - 9599915
Alignment:
Q  22 tgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttgg 108  Q
    |||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||||||    
T  9600001 tgtcatagagatccgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgagcttgggacccgccttgg 9599915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 51850855 - 51850761
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    ||||||||||||||| || ||||||||  ||||  |||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  51850855 atgtcatagagattcgacgaagttttatgttggatgtcgaggcctaacacaaccctctccttttacccaggcttgggactggccttggcaggatt 51850761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 8670808 - 8670879
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggc 92  Q
    |||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  8670808 atgttatagagattcgacaaagttttacattggctgtcgaggcctaacacaaccctctccttttacccgggc 8670879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 52815098 - 52815018
Alignment:
Q  25 catagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggcct 105  Q
    |||||||| ||||||||||||||| ||||  ||| |||||||||||||||||||| ||||||||| | |||||||||||||    
T  52815098 catagagagtcaacaaagttttacgttggttgtcaaggcctaacacaaccctctccttttacccgagtttgggaccggcct 52815018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 6985616 - 6985696
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggc 103  Q
    ||||||||||||||| |||||||||||| ||||| ||||  |||||||||||||||||| ||| | |||||||||||||||||    
T  6985616 atgtcatagagattcgacaaagttttacgttggctgtcg--gcctaacacaaccctctcctttcatccgggcttgggaccggc 6985696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 6039680 - 6039612
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccg 89  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||| |||||| |||| |||||||||    
T  6039680 atgtcatagagattcaacaaagttttacgttggctgttgaggcctaatacaaccttctccttttacccg 6039612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 52463090 - 52463154
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctcttttta 85  Q
    ||||||||||||||| |||||||||||  ||||| ||||||| |||||||||||||||| |||||    
T  52463090 atgtcatagagattcgacaaagttttaagttggcagtcgaggtctaacacaaccctctcctttta 52463154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 15424512 - 15424604
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    |||| |||||||||  |||||||||||| ||||  |||| |||||||||||| |||||| ||||| || ||||||||||||||||||| ||||||    
T  15424512 atgttatagagatttgacaaagttttacgttggttgtcgtggcctaacacaa-cctctccttttatcc-ggcttgggaccggccttggtaggatt 15424604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 16538789 - 16538850
Alignment:
Q  56 gtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggattat 117  Q
    ||||||| ||||||||||| |||| ||||||| | ||||||||||| |||||||||||||||    
T  16538789 gtcgaggtctaacacaaccatctccttttaccagagcttgggaccgaccttggcaggattat 16538850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 14732397 - 14732466
Alignment:
Q  31 gattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccg 101  Q
    ||||||||||||| |||| ||| | | ||||| ||||||||||||||||| |||| ||||||||| |||||    
T  14732397 gattcaacaaagtattacgttgactgccgaggtctaacacaaccctctctgttta-ccgggcttgagaccg 14732466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 51444589 - 51444631
Alignment:
Q  75 ctctctttttacccgggcttgggaccggccttggcaggattat 117  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||    
T  51444589 ctctccttttacccgtgcttgggaccggctttggcaggattat 51444631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 31566262 - 31566364
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggattatgtt 120  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||    
T  31566262 atgtcatagagattctacaaagttctacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggaccggctttggcaggattaggtt 31566361  T
Q  121 atc 123  Q
    |||    
T  31566362 atc 31566364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 52136411 - 52136315
Alignment:
Q  19 ctatgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    ||||||||||||||||| |||||||||||| |||||  || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52136411 ctatgtcatagagattcgacaaagttttacgttggctatcaaggcctaacacaaccctctccttttacccgggcttgggaccggccttggcaggatt 52136315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 51450771 - 51450861
Alignment:
Q  25 catagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    |||||| |||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51450771 catagatattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggaccggccttggcaggatt 51450861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 7023241 - 7023146
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    ||||||||||||||  | |||||||||| ||||| || ||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||||    
T  7023241 atgtcatagagatttgataaagttttacgttggctgttgaggcctaacacaaccctctccttttacctgggcttgggaccgaccttagcaggatta 7023146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 9256355 - 9256267
Alignment:
Q  19 ctatgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttg 107  Q
    ||||| ||||||||||| ||||| |||||| ||||| || ||||||||||||||||||||| ||||||||| |||| || |||||||||    
T  9256355 ctatgccatagagattcgacaaaattttacgttggctgttgaggcctaacacaaccctctccttttacccgagcttagggccggccttg 9256267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 27215624 - 27215702
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggac 99  Q
    ||||||||||||| |||||||||||||| |||    | ||||||| ||||||||||| | |||||||||| ||||||||    
T  27215624 atgtcatagagatacaacaaagttttacgttgcttattgaggcctgacacaaccctcaccttttacccggacttgggac 27215702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 16598 - 16690
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcagga 113  Q
    ||||||||||||||| | |||||||||| ||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  16598 atgtcatagagattctaaaaagttttacgttggctgtcaaggcctgacacaaccctctttttttacccgggcttgggaccggccttggcagga 16690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 18477 - 18383
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatt 115  Q
    ||||||||||||||| |||||||||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  18477 atgtcatagagattcgacaaagttttacgttggttgtcgaggcttaacacaaccttctccttttacccgggcttgggaccggctttggcaggatt 18383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 48260 - 48350
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcag 111  Q
    ||||||||||||||| | |||||| ||  ||||| |||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||    
T  48260 atgtcatagagattcgataaagttatatgttggctgtcgaggcctaacgaaaccctctccttttacccggacttgggaccggccttggcag 48350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 54529636 - 54529556
Alignment:
Q  22 tgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggc 103  Q
    |||||||| ||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  54529636 tgtcatag-gattcgacaaagtgttacgttggctgtcgaggcctaacacaaccctctctttttacccagccttgggaccggc 54529556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 16000320 - 16000228
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggattat 117  Q
    |||||||||||| ||||||||||||||| ||| | ||||||    |||||||||||||| |||||||||| ||||||||||| ||||| ||||||||    
T  16000320 atgtcatagagactcaacaaagttttacgttgactgtcgag----aacacaaccctctccttttacccggacttgggaccggtcttggtaggattat 16000228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 27453167 - 27453260
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    |||||||||||||||  ||||||||||| ||||| |||||||| ||||| ||||   || |||||| ||||||||||| || |||||| |||||||    
T  27453167 atgtcatagagattcggcaaagttttacgttggctgtcgaggcataacataacc--ttccttttactcgggcttgggatcgaccttggtaggatta 27453260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 38475067 - 38475124
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctct 78  Q
    ||||||||||||||| |||| ||||||| |||||  | |||||||||||||| |||||    
T  38475067 atgtcatagagattcgacaacgttttacgttggctattgaggcctaacacaagcctct 38475124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 883570 - 883626
Alignment:
Q  60 aggcctaacacaaccctctctttttacccgggcttgggaccggccttggcaggatta 116  Q
    |||||||||||||| ||||  ||||||| | |||||| |||| ||||||||||||||    
T  883570 aggcctaacacaactctctgcttttacctgagcttggaaccgaccttggcaggatta 883626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 42309152 - 42309192
Alignment:
Q  59 gaggcctaacacaaccctctctttttacccgggcttgggac 99  Q
    |||||||||||||||||| || ||||| |||||||||||||    
T  42309152 gaggcctaacacaaccctatccttttatccgggcttgggac 42309192  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 440178 - 440120
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctc 79  Q
    ||||||||||||||  |||||||||||| ||||| ||||||||||||||||| ||||||    
T  440178 atgtcatagagatttgacaaagttttacgttggctgtcgaggcctaacacaatcctctc 440120  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 46833168 - 46833228
Alignment:
Q  21 atgtcatagagattcaacaaagttttaccttggccgtcgaggcctaacacaaccctctcttttt 84  Q
    ||||||||||||||| |||||||||||| |||   || ||||||||||||||||||||| ||||    
T  46833168 atgtcatagagattcgacaaagttttacgttg---gttgaggcctaacacaaccctctcctttt 46833228  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 36232159 - 36232115
Alignment:
Q  30 agattcaacaaagttttaccttggccgtcgaggcctaacacaacc 74  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||    
T  36232159 agattcgacaaagttttatgttggctgtcgaggcctaacacaacc 36232115  T

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