View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_16 (Length: 258)
Name: NF15714_low_16
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 33806728 - 33806949
Alignment:
| Q |
30 |
attaagaactaactcagactatcacccatttttgcttgattttgaagccactcaaaacaagtttgttacctagtttaaatttcaataaatgtggaccctg |
129 |
Q |
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| T |
33806728 |
attaagaactaacttagaccatcacccaattttccttgattttgaagccactcaaaacaagtttgttacctagtttaaatttcaataaatgtggacccta |
33806827 |
T |
|
| Q |
130 |
catacagactatagaaacattgtaacctcaacctggaattttaatgtagttggttgtcccatgttcattctatcctaaaatctccagatgcgcaaaataa |
229 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
33806828 |
catacagactatagaaacattgtaacctcaacctagaattttaatgtagttggttgtcccatgttcattctatcctaaaagctccagatgctcaaaataa |
33806927 |
T |
|
| Q |
230 |
accttaggaactagaacaaaga |
251 |
Q |
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||||||| |||| ||||||||| |
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| T |
33806928 |
accttagaaactggaacaaaga |
33806949 |
T |
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