View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_2 (Length: 522)
Name: NF15714_low_2
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 14 - 507
Target Start/End: Complemental strand, 34240071 - 34239578
Alignment:
| Q |
14 |
ttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctcagcctcggcttcagcatcttccacgcttccctcagctc |
113 |
Q |
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| T |
34240071 |
ttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctcagcctcggcttcagcatcttccacgcttccctcagctc |
34239972 |
T |
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| Q |
114 |
ttctttttgactgtgatggagtccttgtagatactgaaaaagatggtcaccgcatttctttcaatgatactttccaagaggtgcctcctgctttttaatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239971 |
ttctttttgactgtgatggagtccttgtagatactgaaaaagatggtcaccgcatttctttcaatgatactttccaagaggtgcctcctgctttttaatc |
34239872 |
T |
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| Q |
214 |
tttcttttttcacaagtaaatattacttcttattatggttataactattcttaatagaagtcattgataagataaaagtatagaacaactagcgtgtaca |
313 |
Q |
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| T |
34239871 |
tttcttttttcacaagtaaatattacttcttattatggttataactattcttaatagaagtcattgataagataaaagtatagaacaactagcgtgtaca |
34239772 |
T |
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| Q |
314 |
ataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaaccttagtaatcaggtttgaatcctagaactagaatgccttca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34239771 |
ataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaaccttagtaatcaggtttgaatcctagaactagaatgtcttca |
34239672 |
T |
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| Q |
414 |
tcctacctcagccacctacgccttggaactagtatgcaatcgaaagtagtacactaactgagatgctttagcaataacacttgaatgtgttgtt |
507 |
Q |
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| T |
34239671 |
tcctacctcagccacctacgccttggaactagtatgcaatcgaaagtagtacactaactgagatgctttagcaataacacttgaatgtgttgtt |
34239578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 35094025 - 35093967
Alignment:
| Q |
313 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa |
371 |
Q |
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| T |
35094025 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaa |
35093967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 484020 - 483984
Alignment:
| Q |
257 |
actattcttaatagaagtcattgataagataaaagta |
293 |
Q |
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| T |
484020 |
actattcttaatagaagtcattgataagagaaaagta |
483984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
| Q |
313 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatcta |
370 |
Q |
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|||||| ||||||||| | |||||| |||||||| |||||||| ||||||||||||| |
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| T |
40620 |
aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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