View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_3 (Length: 522)
Name: NF15714_low_3
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_3 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 10 - 498
Target Start/End: Complemental strand, 50394721 - 50394233
Alignment:
| Q |
10 |
atcatccttatcaacttgtcttaaaaactaagttgtcaccacatgctgccgttgaccaattttgtcatcttcttctgtcttacccacgttctttacctcc |
109 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394721 |
atcatccttatccacttgtcttaaaaactaagttgtcaccacatgctgccgttgaccaattttgtcatcttcttctgtcttacccacgttctttacctcc |
50394622 |
T |
|
| Q |
110 |
accatttcagcttcttccctgtatctcttgtatatgtcacctttgtaaaactttctggtcctagccacccaaataagtgaaacaacagcaccaaaaaatg |
209 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
50394621 |
accatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatg |
50394522 |
T |
|
| Q |
210 |
ttgcagctgtaataataatgaaagacaacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattg |
309 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
50394521 |
ttgcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaattcaattcatgcccttctattctatgctttccaagtgcttccaattg |
50394422 |
T |
|
| Q |
310 |
cttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgca |
409 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394421 |
tttcttagcctctttgtcatacaaatgaccagtgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgca |
50394322 |
T |
|
| Q |
410 |
taatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctac |
498 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394321 |
taatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctac |
50394233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 39 - 498
Target Start/End: Complemental strand, 50386273 - 50385814
Alignment:
| Q |
39 |
aagttgtcaccacatgctgccgttgaccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttccctgtatctctt |
138 |
Q |
| |
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|||||||| | ||||||||| ||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
50386273 |
aagttgtcgcaacatgctgctgttgaccaactttgtcatcttcctctgtcttttctacgttctttacctccaccatttcagcttcttccctatatctctt |
50386174 |
T |
|
| Q |
139 |
gtatatgtcacctttgtaaaactttctggtcctagccacccaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaagacaac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
50386173 |
gtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtgataataatgaaagataac |
50386074 |
T |
|
| Q |
239 |
ttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgac |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386073 |
ttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgac |
50385974 |
T |
|
| Q |
339 |
cagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatat |
438 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50385973 |
cagcgatcttcacattaagcacatataatccaaggggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatat |
50385874 |
T |
|
| Q |
439 |
aatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctac |
498 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50385873 |
aatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagctac |
50385814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 65 - 501
Target Start/End: Complemental strand, 50391392 - 50390956
Alignment:
| Q |
65 |
ccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttccctgtatctcttgtatatgtcacctttgtaaaactttc |
164 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
50391392 |
ccaactttgtcaccttcttctgtctttcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttc |
50391293 |
T |
|
| Q |
165 |
tggtcctagccacccaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaagacaacttgtaacaatcaacaccaacacaatt |
264 |
Q |
| |
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| |||||||| ||| ||||||| ||||||||||||||| || |||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
50391292 |
ttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaataataatgaaagataacttgaaacaatcaacgccaacacaatt |
50391193 |
T |
|
| Q |
265 |
caattcctgcccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatat |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
50391192 |
caattcctgcccttctattctttgctttccaagtgcttccaattgtttctcagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatat |
50391093 |
T |
|
| Q |
365 |
aatccaagtggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgag |
464 |
Q |
| |
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|| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
50391092 |
aagccaattggacttgttatacttccaaaattatacaaagttgcataatatttaagtccaaagagttctgatataatggcaaaaagtaacggccattgag |
50390993 |
T |
|
| Q |
465 |
caccaaaacaaaatccaataatcactgaagctacata |
501 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |
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|
| T |
50390992 |
caccaaaacaaaatccgataataactgaagctacata |
50390956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 304 - 495
Target Start/End: Complemental strand, 50408037 - 50407846
Alignment:
| Q |
304 |
caattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaa |
403 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||||| | | |||||||| | ||||||||||| |||||| ||||| | ||||| || |||| |
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|
| T |
50408037 |
caattgcctcttagcttctttgtcatataaatgaccagcgaccctaacattaagaaaatataatccaattggactagctaccccaccaaagttcatcaaa |
50407938 |
T |
|
| Q |
404 |
gttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaacaaaatccaataatcactgaagc |
495 |
Q |
| |
|
|||| ||||||||| | ||||| | || || || |||||||||| ||||||||||| |||||||||||||||||||| || |||||||| |
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|
| T |
50407937 |
gttgaataatatttcaacccaaacaactccgaaattatggcaaaaaccaatggccattgtgcaccaaaacaaaatccaatgattactgaagc |
50407846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 273
Target Start/End: Complemental strand, 50408207 - 50408068
Alignment:
| Q |
134 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccacccaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaag |
233 |
Q |
| |
|
||||||||||| |||||||| |||||||| | || || ||||| |||||||||||| || |||||||| || || || || || ||||||||||||| |
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|
| T |
50408207 |
ctcttgtatatatcacctttataaaacttatttgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaag |
50408108 |
T |
|
| Q |
234 |
acaacttgtaacaatcaacaccaacacaattcaattcctg |
273 |
Q |
| |
|
|||| || ||||| | || ||||||||||||||||| |
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|
| T |
50408107 |
acaatctgaaacaacttgctcctacacaattcaattcctg |
50408068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 226 - 366
Target Start/End: Complemental strand, 34297438 - 34297297
Alignment:
| Q |
226 |
aatgaaagacaacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctt-tccaagtgcttccaattgcttctttgcttcttt |
324 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| |||||||||||| |||| || | ||| | || |||||||||||||||||| || || ||||| || |
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|
| T |
34297438 |
aatgaaagataacttcaaacaatcaacaccaatacaattcaattcatgccttttttttcctacgttgtccaagtgcttccaattgattattagcttcctt |
34297339 |
T |
|
| Q |
325 |
gtcatacaaatgaccagcgatcttcacattaagcacatataa |
366 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
34297338 |
gtcatacaaatgaccagtgattgtaacattaagcacatataa |
34297297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 489
Target Start/End: Complemental strand, 41335065 - 41334950
Alignment:
| Q |
374 |
ggacttgctacacttccaaaattatacaaagttgcataatatttaagtccaaaaagttctgatataatggcaaaaagtaatggccattgagcaccaaaac |
473 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||| ||| ||||| | |||||||| ||| ||||| || ||||| | |||||||||||||| ||||||| |
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|
| T |
41335065 |
ggacttgccacagctccaaaattgtacaaagttgaatagtatttcaatccaaaaatttcggatatgattgcaaacatcaatggccattgagctccaaaac |
41334966 |
T |
|
| Q |
474 |
aaaatccaataatcac |
489 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
41334965 |
aaaaaccaataatcac |
41334950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 411
Target Start/End: Complemental strand, 3735 - 3641
Alignment:
| Q |
317 |
gcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatccaagtggacttgctacacttccaaaattatacaaagttgcata |
411 |
Q |
| |
|
|||||||||| |||| |||||| | |||||||||| | || ||| |||| ||||| || ||||||||||||||||| | |||||||||||||| |
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|
| T |
3735 |
gcttctttgtgataccaatgactggtgatcttcacaatcagaacagataacacaagttgagttgctacacttccaaaactgtacaaagttgcata |
3641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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