View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_5 (Length: 424)
Name: NF15714_low_5
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 46429388 - 46429801
Alignment:
| Q |
17 |
aacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagatgttatacctcccaatctct-aagtccctcatgcaataccgccagaa |
115 |
Q |
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| T |
46429388 |
aacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagacgttatacctcccaatctcttaagtccctcatgcaataccgccagaa |
46429487 |
T |
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| Q |
116 |
tcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttggagaagcacatttaactaaaacgtagga |
215 |
Q |
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| T |
46429488 |
tcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgtagga |
46429587 |
T |
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| Q |
216 |
catgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaactt-------------caacaagtagatga |
302 |
Q |
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| T |
46429588 |
catgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaacagataaatgcaacaggtagatga |
46429687 |
T |
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| Q |
303 |
ttgtgtaataatctact-nnnnnnnctgttttcatgtagagggaccatgactatctcattgatatacaagcatcaaattgcagctaatatcagttgaaaa |
401 |
Q |
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| T |
46429688 |
ttgtgtaataatctactaaaaaaaactgctttcatgtagagggaccatgactatctcattgatatacaaacatcaaattgcagctaatatcagttgaaaa |
46429787 |
T |
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| Q |
402 |
aattgagtgatgat |
415 |
Q |
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| T |
46429788 |
aactgagtgctgat |
46429801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 46426146 - 46426204
Alignment:
| Q |
236 |
cattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaacaa |
294 |
Q |
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| T |
46426146 |
cattcatcagaaatgtcaagaagtaagtcaggtaaatagtaaatttaacacttcaacaa |
46426204 |
T |
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