View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_6 (Length: 407)
Name: NF15714_low_6
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 1490704 - 1490855
Alignment:
| Q |
20 |
tgcagccttatccctgtaggctggtaggctatttccaatgcttgaacacgtgacttttaggtcacaacacaacaaccctaccgtttcaccaaggtctatc |
119 |
Q |
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| T |
1490704 |
tgcagccttatccctgtaggctgataggctatttccaatgcttgaacacgtgacttttaggtcacaacacaacaaccttaccgtttcaccaaggtctatc |
1490803 |
T |
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| Q |
120 |
gtcgtaaccaatagaacaaattgacaaaagagaaaataaaaataacttatct |
171 |
Q |
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| T |
1490804 |
ctcgtaaccaatagaacaaattgacaaaagagaaaataaaaataacttatct |
1490855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 1491256 - 1491378
Alignment:
| Q |
175 |
aggttcttcaaacattctacaaggttggtggaaagacataataaaatttgacaaaacggtccaactgcaattgccaaatatgaagaggaaataggaattt |
274 |
Q |
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| T |
1491256 |
aggttcttcaaacaatctacaaggttggtggaaagacaaagtaaaatttgacaaaacggtccaactgcaattgccaaatatgaagaggaaataggaattt |
1491355 |
T |
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| Q |
275 |
caacattgaatgacatgttgaat |
297 |
Q |
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| T |
1491356 |
caacattgaatgacatgttgaat |
1491378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 199 - 347
Target Start/End: Original strand, 1482342 - 1482491
Alignment:
| Q |
199 |
ttggtggaaagacataataaaatttgacaaaa-cggtccaactgcaattgccaaatatgaagaggaaataggaatttcaacattgaatgacatgttgaat |
297 |
Q |
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| T |
1482342 |
ttggtggaaagacagggtaaaatttgaaaaaaacggtgcagctgcaattgcaaatcatgaagattaaagaggaatttcaacaatgaatgacatgttgaat |
1482441 |
T |
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| Q |
298 |
ggtgaaccattaacacattgctcattgaataaactacctgacacaacatt |
347 |
Q |
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| T |
1482442 |
ggtgaaccagtaacagcttactcattgaatgaactacctgacacaacatt |
1482491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 4154178 - 4154034
Alignment:
| Q |
198 |
gttggtggaaagacataataaaatttgacaaaa-cggtccaactgcaattgccaaatatgaagaggaaataggaatttcaa-cattgaatgacatgttga |
295 |
Q |
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| T |
4154178 |
gttggtggaaagataaagttaaatttgacaaaaacgatgcacctgcaattgcaaaacatgaagaataaaaaggaattgccagcaatgaatgacatgttaa |
4154079 |
T |
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| Q |
296 |
atggtgaaccattaacacattgctcattgaataaactacctgaca |
340 |
Q |
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| T |
4154078 |
atggtgaaccagcaacacctcacttattgaatgaaatacctgaca |
4154034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 1491627 - 1491659
Alignment:
| Q |
370 |
ttgatctaactgtgttcatgctttcttctcact |
402 |
Q |
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| T |
1491627 |
ttgatctaactgtgttcatgctttcttatcact |
1491659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 20901441 - 20901521
Alignment:
| Q |
200 |
tggtggaaagacataataaaatttgacaaaa-cggtccaactgcaattgccaaatatgaagaggaaataggaatttcaaca |
279 |
Q |
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| T |
20901441 |
tggtggaaagatatagttaaattcgacaaaaacggtccagcggcaattgctaaatatgaagcggaaaatggaattacaaca |
20901521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 20919904 - 20919984
Alignment:
| Q |
200 |
tggtggaaagacataataaaatttgacaaaa-cggtccaactgcaattgccaaatatgaagaggaaataggaatttcaaca |
279 |
Q |
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| T |
20919904 |
tggtggaaagaaatagttaaattcgacaaaaacggtccagcggcaattgctaaatatgaagcggaaaatggaattacaaca |
20919984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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