View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15714_low_7 (Length: 397)
Name: NF15714_low_7
Description: NF15714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15714_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 32244250 - 32244628
Alignment:
| Q |
1 |
gtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgcatgcctataaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |
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| T |
32244250 |
gtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgcatgcctatgaatt |
32244348 |
T |
|
| Q |
101 |
cttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagtt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244349 |
cttaatttcctacacatcacattaagatat--atgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagtt |
32244446 |
T |
|
| Q |
201 |
aaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttctttttcactctacttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
32244447 |
aaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttctttttcactttacttaa |
32244546 |
T |
|
| Q |
301 |
ttcatttacagttttcattaagccataacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaatt |
382 |
Q |
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| T |
32244547 |
ttcatttacagttttcattaagcagtaacagtgttgctcagactcaaatatatagatgtatgtagtgattaaagtagaaatt |
32244628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 32249959 - 32250337
Alignment:
| Q |
1 |
gtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgcatgcctataaatt |
100 |
Q |
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|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |
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| T |
32249959 |
gtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgcatgcctatgaatt |
32250057 |
T |
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| Q |
101 |
cttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatcatgactgcagtt |
200 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||| ||||||||||| |
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| T |
32250058 |
cttaatttcctacacatcacattatgatagatatgtgca--gagacatcacagagggtatatttgttgctatcttcacatatggaatcctgactgcagtt |
32250155 |
T |
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| Q |
201 |
aaatgaatgagaacaaatgtatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttctttttcactctacttta |
300 |
Q |
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| T |
32250156 |
aaatgaatgagaacaaatatatatggcatgggatggtcccatgcattctgcgtcgattctttacatgttgatatcattacttctttttcactctacttta |
32250255 |
T |
|
| Q |
301 |
ttcatttacagttttcattaagccataacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaatt |
382 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250256 |
ttcatttacagttttcattaagccgtaacagtgttgctcagactcaaatatatagatgtatggagtaattaaagtagaaatt |
32250337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 32254779 - 32254912
Alignment:
| Q |
1 |
gtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgcatgcctataaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |
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| T |
32254779 |
gtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgctaagttcatgacattcttcaccatgcatgcctatgaatt |
32254878 |
T |
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| Q |
101 |
cttaatttcctacacatcacattaagatatatat |
134 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
32254879 |
cttaatttcctacacatcacattattatatatat |
32254912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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