View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15714_low_9 (Length: 362)

Name: NF15714_low_9

Description: NF15714

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15714_low_9

[»] chr4 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 145; E-Value: 3e-76

Query Start/End: Original strand, 118 - 315

Target Start/End: Complemental strand, 28691830 - 28691642

Alignment:

Q	118	gaacctgtggcctatttaggtatgctgcagtataatctgatgcacatggatcatatcctgctagatttttatgccacccgtcctattaaaatcgacaatt	217	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	28691830	gaacctctggcctatttaggtatgctgcagtataatctgatgcacatggatcatatcctgctagatttttatgccacccgtcctattaaaattgacaatt	28691731	T

Q	218	tcaataggcaagtaactttagttgctgtagtatacgtgtactagtttttaagttctaaattgatgaattaactcaccagtaccaatttggaaaaagaa	315	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28691730	tcaataggcaagtaacgttagttgcagta------gtgtactagtttttaagttctaaattgatga---aactcaccagtaccaatttggaaaaagaa	28691642	T

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Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 92; E-Value: 1e-44

Query Start/End: Original strand, 18 - 117

Target Start/End: Original strand, 8682744 - 8682843

Alignment:

Q	18	gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaacgagca	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	8682744	gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca	8682843	T

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