View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_high_13 (Length: 382)
Name: NF15715_high_13
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 8337152 - 8337519
Alignment:
| Q |
1 |
gtagaattaacgtcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatattgtaaaataagcttaaagt |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8337152 |
gtagaattaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatatggtaaaataagcttaaagt |
8337251 |
T |
|
| Q |
101 |
gaataagtaacnnnnnnnntttgttttcataaacaaaagtaaaatcaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatctcccat |
200 |
Q |
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| T |
8337252 |
gaataagtaacaaaataaatttgttttcataaacaaaagtaaaaccaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatgtcccat |
8337351 |
T |
|
| Q |
201 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatcttttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8337352 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactgctgtccatttatctttgactcgaactgacagcttccacaaatcttttt |
8337451 |
T |
|
| Q |
301 |
gatctgtgatagcagcaatgaactctttaggtctttccatgtccaggacctgatgaataggtgtttcc |
368 |
Q |
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| T |
8337452 |
tatctgtgacagcagcaatgaactctttaggtctttccatgttcaggacttgatgaataggtgtttcc |
8337519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 121 - 368
Target Start/End: Original strand, 10234550 - 10234797
Alignment:
| Q |
121 |
ttgttttcataaacaaaagtaaaatcaatgagtgaccaaaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcag |
220 |
Q |
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| T |
10234550 |
ttgttttcataaacaaaagtaaaaccaatcagtgaccagaaaatagcagtagggtattatgttcaaatgttatctcccataccttagcatcaacaatcag |
10234649 |
T |
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| Q |
221 |
caattccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatctttttgatctgtgatagcagcaatg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234650 |
caattccaaatgttcttttccatccttcactactgtccatttatctttgactcgaactgacagcttccacaaatctttttgatctgtgatagcagcaatg |
10234749 |
T |
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| Q |
321 |
aactctttaggtctttccatgtccaggacctgatgaataggtgtttcc |
368 |
Q |
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|||||||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
10234750 |
aactctttaggtctttccattttcaggacttgatgaataggtgtttcc |
10234797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 10234268 - 10234378
Alignment:
| Q |
1 |
gtagaattaacgtcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatattgtaaaataagcttaaagt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
10234268 |
gtagaattaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtacttgaatatcatggccctaatatggtaaaataagcttaaagt |
10234367 |
T |
|
| Q |
101 |
gaataagtaac |
111 |
Q |
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||||||||||| |
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| T |
10234368 |
gaataagtaac |
10234378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 28729082 - 28729012
Alignment:
| Q |
201 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactactgtccatttatctttgac |
271 |
Q |
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|||||| |||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| ||||| |
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| T |
28729082 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatccttgac |
28729012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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