View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15715_high_16 (Length: 333)

Name: NF15715_high_16
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15715_high_16
NF15715_high_16
[»] chr1 (4 HSPs)
chr1 (1-279)||(3306601-3306879)
chr1 (277-319)||(3306534-3306576)
chr1 (1-143)||(6699511-6699656)
chr1 (1-118)||(17892895-17893009)
[»] chr4 (3 HSPs)
chr4 (98-148)||(46737400-46737450)
chr4 (23-147)||(8291030-8291154)
chr4 (67-140)||(29927282-29927355)
[»] chr6 (2 HSPs)
chr6 (1-70)||(33167933-33168002)
chr6 (106-147)||(33134296-33134337)
[»] chr5 (2 HSPs)
chr5 (1-74)||(11314877-11314950)
chr5 (60-125)||(11600795-11600859)
[»] chr2 (1 HSPs)
chr2 (67-137)||(13530612-13530682)
[»] chr8 (4 HSPs)
chr8 (1-120)||(3403719-3403838)
chr8 (20-74)||(14599465-14599519)
chr8 (106-140)||(27134648-27134682)
chr8 (1-60)||(42354099-42354159)
[»] chr3 (4 HSPs)
chr3 (105-141)||(42225957-42225993)
chr3 (110-147)||(52041517-52041554)
chr3 (23-118)||(23917109-23917207)
chr3 (109-137)||(53466211-53466239)
[»] chr7 (3 HSPs)
chr7 (23-84)||(4656112-4656173)
chr7 (109-145)||(42662139-42662175)
chr7 (109-137)||(46347127-46347155)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 3306879 - 3306601
Alignment:
Q  1 ttgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaagacatatttattattt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3306879 ttgtttaagcaactaaaaagaataacttttgcatagaaagtgatgtaattattagtttgaaactactttgacttggatttccaagacatatttattattt 3306780  T
Q  101 gtgtattccttaaacaatgtctttaagacacttgttagcatgacccttagattttggttctagtatcctcaacgaataatgtttttatttcatgcataac 200  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3306779 gtgtattctttaaacaatgtctttaggacacttgttagcatgacccttagattttggttctagtatcctcaacgaataatgtttttatttcatgcataac 3306680  T
Q  201 cattgtgccaacgaattttgcccatgtacaatgattataacttggtccgcacttttgtcgctgacttctccctcatgac 279  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||    
T  3306679 cattgtgccaacaaattttgctcatgtacaatgattataacttggtccgtacttttgtcgccgtcttctccctcatgac 3306601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 3306576 - 3306534
Alignment:
Q  277 gaccaagataatggcagttcttgtcggggggtgtacaacagtg 319  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  3306576 gaccaagataatggcagttcttgtcagggggtgtacaacagtg 3306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 6699656 - 6699511
Alignment:
Q  1 ttgtttaagcaactaaaaaga--ataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttgg-atttccaagacatatttatta 97  Q
    |||||||||||||||||||||  ||||  ||||  ||||| ||| ||||||||||| ||| | |||| ||| |||| | |||| | | ||| ||||  ||    
T  6699656 ttgtttaagcaactaaaaagagtataatatttgcgtagaaggtggtgtaattattactttaagactattttaacttagtattttcgaaacaaattttcta 6699557  T
Q  98 tttgtgtattccttaaacaatgtctttaagacacttgttagcatga 143  Q
    ||||||||||||||| |||||||  |||| ||||||||||||||||    
T  6699556 tttgtgtattccttatacaatgttattaaaacacttgttagcatga 6699511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 17892895 - 17893009
Alignment:
Q  1 ttgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaagacatatttattattt 100  Q
    |||||||||||||||||||   ||||||||  ||| |||| ||||||||||||| ||| | | |||||||||||  |||| ||||| | | ||  |||||    
T  17892895 ttgtttaagcaactaaaaa---taacttttacatataaagcgatgtaattattactttaagattactttgacttatattttcaagataaaatttatattt 17892991  T
Q  101 gtgtattccttaaacaat 118  Q
    ||||||| ||||||||||    
T  17892992 gtgtattgcttaaacaat 17893009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 46737450 - 46737400
Alignment:
Q  98 tttgtgtattccttaaacaatgtctttaagacacttgttagcatgaccctt 148  Q
    ||||||| |||||||||||||||| |||||||||||||||||| |||||||    
T  46737450 tttgtgtgttccttaaacaatgtccttaagacacttgttagcaagaccctt 46737400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 8291154 - 8291030
Alignment:
Q  23 taacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaagacatatttattatttgtgtattccttaaacaatgtct 122  Q
    ||||||||| ||||||| |||||||||||| | | ||| |    ||||||||| |||||||||||| ||||    | | |||||||||||||||||| |     
T  8291154 taacttttgcatagaaaatgatgtaattatgactatgacaagtgtttgacttgtatttccaagacaaattttccttatatgtattccttaaacaatgccc 8291055  T
Q  123 ttaagacacttgttagcatgaccct 147  Q
    ||| | |||||||||||||||||||    
T  8291054 ttagggcacttgttagcatgaccct 8291030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 29927355 - 29927282
Alignment:
Q  67 tttgacttggatttccaagacatatttattatttgtgtattccttaaacaatgtctttaagacacttgttagca 140  Q
    ||||||||| |||||||||||| | ||  | |||||| ||||||||||||||| | ||| | ||||||||||||    
T  29927355 tttgacttgtatttccaagacaaagtttctttttgtggattccttaaacaatgcccttagggcacttgttagca 29927282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33167933 - 33168002
Alignment:
Q  1 ttgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttg 70  Q
    ||||||||| || |||||||||||| ||||| ||||||| | |||||||||||| ||||| |||||||||    
T  33167933 ttgtttaagaaaataaaaagaataatttttgcatagaaaataatgtaattattactttgagactactttg 33168002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 33134296 - 33134337
Alignment:
Q  106 ttccttaaacaatgtctttaagacacttgttagcatgaccct 147  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  33134296 ttccttaaacaatgcctttaagacacttgttaacaagaccct 33134337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11314950 - 11314877
Alignment:
Q  1 ttgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgactt 74  Q
    |||||||| ||| |||||||| ||||||||||||| ||| |||| ||||| ||| |||||||||| ||||||||    
T  11314950 ttgtttaaacaattaaaaagagtaacttttgtataaaaaatgatttaattgttattttgaaactaatttgactt 11314877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 11600795 - 11600859
Alignment:
Q  60 aaactactttgacttggatttccaagacatatttattatttgtgtattccttaaacaatgtcttta 125  Q
    |||||||||||||||  |||||||| |||  |||  ||||||||||||||||||||||||| ||||    
T  11600795 aaactactttgacttt-atttccaatacaatttttctatttgtgtattccttaaacaatgttttta 11600859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 13530612 - 13530682
Alignment:
Q  67 tttgacttggatttccaagacatatttattatttgtgtattccttaaacaatgtctttaagacacttgtta 137  Q
    ||||||||| |||| ||||||| | || || |||||| ||||||| ||||||||| |||||||||||||||    
T  13530612 tttgacttgtattttcaagacaaactttttttttgtggattcctttaacaatgtccttaagacacttgtta 13530682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 3403838 - 3403719
Alignment:
Q  1 ttgtttaagcaactaaaaagaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaaga-catatttattatt 99  Q
    ||||||||||||||| |   ||||| |||||| |  ||| |||| ||||||||| ||||| |||||||||||||| | || |||||  | ||||||| ||    
T  3403838 ttgtttaagcaactatagtaaataaattttgtctgaaaaatgatataattattattttgagactactttgacttgtaattacaagataaaatttatt-tt 3403740  T
Q  100 tgtgtattccttaaacaatgt 120  Q
    |||| ||||||||||||||||    
T  3403739 tgtgaattccttaaacaatgt 3403719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 14599465 - 14599519
Alignment:
Q  20 gaataacttttgtatagaaagtgatgtaattattaatttgaaactactttgactt 74  Q
    ||||||| ||||||||||||   |||||||||||| ||| |||||||||||||||    
T  14599465 gaataacatttgtatagaaaacaatgtaattattactttaaaactactttgactt 14599519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 27134648 - 27134682
Alignment:
Q  106 ttccttaaacaatgtctttaagacacttgttagca 140  Q
    |||||||||||||||||||| ||||||||||||||    
T  27134648 ttccttaaacaatgtctttaggacacttgttagca 27134682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42354099 - 42354159
Alignment:
Q  1 ttgtttaagcaactaaaaagaataacttttgtatagaaag-tgatgtaattattaatttga 60  Q
    ||||||||| ||||||||| || ||||||| |||| || | ||||||||||||||||||||    
T  42354099 ttgtttaagaaactaaaaaaaacaacttttatataaaagggtgatgtaattattaatttga 42354159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 42225993 - 42225957
Alignment:
Q  105 attccttaaacaatgtctttaagacacttgttagcat 141  Q
    ||||||||||||||||||||| |||||||||||||||    
T  42225993 attccttaaacaatgtctttaggacacttgttagcat 42225957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 52041554 - 52041517
Alignment:
Q  110 ttaaacaatgtctttaagacacttgttagcatgaccct 147  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  52041554 ttaaacaatgtctttaggacacttgttagcaagaccct 52041517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 23917109 - 23917207
Alignment:
Q  23 taacttttgtatagaaagtgatgta---attattaatttgaaactactttgacttggatttccaagacatatttattatttgtgtattccttaaacaat 118  Q
    |||||||||| |||||| |||||||   ||||||| ||||||| |||||| ||||| |||||  | ||| | || | |||||||||||| |||||||||    
T  23917109 taacttttgtttagaaaatgatgtaattattattactttgaaattactttaacttgtatttctgaaacaaaattttaatttgtgtattctttaaacaat 23917207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 53466239 - 53466211
Alignment:
Q  109 cttaaacaatgtctttaagacacttgtta 137  Q
    |||||||||||||||||||||||||||||    
T  53466239 cttaaacaatgtctttaagacacttgtta 53466211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 4656173 - 4656112
Alignment:
Q  23 taacttttgtatagaaagtgatgtaattattaatttgaaactactttgacttggatttccaa 84  Q
    ||||||||| |||||||  ||||||||||||| || || |||||||| ||||| ||||||||    
T  4656173 taacttttgcatagaaaaagatgtaattattacttcgagactactttaacttgtatttccaa 4656112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 42662139 - 42662175
Alignment:
Q  109 cttaaacaatgtctttaagacacttgttagcatgacc 145  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  42662139 cttaaacaatgactttaggacacttgttagcatgacc 42662175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 46347127 - 46347155
Alignment:
Q  109 cttaaacaatgtctttaagacacttgtta 137  Q
    |||||||||||||||||||||||||||||    
T  46347127 cttaaacaatgtctttaagacacttgtta 46347155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University