View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_high_5 (Length: 460)
Name: NF15715_high_5
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 88 - 442
Target Start/End: Complemental strand, 529818 - 529448
Alignment:
| Q |
88 |
gagaaaaggttatataccatgatgttcccgtggaacgttggtggctgttctaaaaacaagacgatcgctttgtcgatgtaatgtagctacccagcgttta |
187 |
Q |
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| T |
529818 |
gagaaaaggttatataccatgatgttcccgtggaacgttggtggctgttctaaaaaaaagacgatcgctttgtcgatgtaatgtagctacccagcgttta |
529719 |
T |
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| Q |
188 |
gctccaaaagcaagtccagaattaactagaggtttatatatattttgcaccacctgatcatcaacttctacattttcaatccatgtaacctgttaaaaat |
287 |
Q |
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| T |
529718 |
gctccaaatgcaagtccagaattaactagaggtttatatatattttgcaccacctgatcatcaacttctacattttcaatccatgtaacctgttaaacat |
529619 |
T |
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| Q |
288 |
taacaagacaataaataattgataaaattaactatactaatccaca----------------ttaatattattttaggtgaaggtgaaatgtggtaagac |
371 |
Q |
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| T |
529618 |
taacaagacaacaaataattgataaaattaactatactaatccacattaaaataatacaacattaatattattttaggtgaaggtgaaatgtggtaagac |
529519 |
T |
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| Q |
372 |
cttagtgagaccatttgggagtgtctcaatcaaacaaccagagggtcttctgttggttcttgaagcagtac |
442 |
Q |
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| T |
529518 |
cttagtgagaccatttgggagggtctcaatcaaacaaccagagggtcttctgttggttcttgaagcagtac |
529448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 529905 - 529870
Alignment:
| Q |
1 |
tacttttctttccctcaggagtcaatctcactgtac |
36 |
Q |
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| T |
529905 |
tacttttctttccctcaggagtcaatctcactgtac |
529870 |
T |
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