View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15715_low_1 (Length: 1229)
Name: NF15715_low_1
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_1 |
 | |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 637 - 1210
Target Start/End: Complemental strand, 1654554 - 1653981
Alignment:
| Q |
637 |
caatgaagtaatcggtaacggaaagtgaaccttgtttcaaaggattgatgatggattagcaacatgaatgtgatcaaacatggaaaattgttcctttaac |
736 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1654554 |
caatgaagtaatcagtaacggaaagtgaaccttgtttcaaagaattgatgatggattagcaacatgaatgtgatcaaacttggaaaattgttcctttaac |
1654455 |
T |
|
| Q |
737 |
tctttccaaacatcaacaacattcttattaaataagactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatttatacaatatgt |
836 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1654454 |
tctttccaaacatcaacaacattcttaataaataagactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatttatacaatatgt |
1654355 |
T |
|
| Q |
837 |
gtagttaatttctctttatgttgtcaacacaaaactttctctctctaaaaagtacctttctctggattctctctaactccttatcttcgtcgccccttct |
936 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
1654354 |
gtagttaatttctctttatgttgtcaacacaaaactttctctctctaaaaagtacctttctctggattctctctaactccttatctctgccgccccttct |
1654255 |
T |
|
| Q |
937 |
ttccaaatttctttggttctcaatgtaaacggtggtggctggtggtgcgaagatggaaaaccatccgcatcaccactggtctctggtgggtgcgtcgacg |
1036 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |
|
|
| T |
1654254 |
ttccaaatttctttggttctcaatgtaaacggcggtgggtggtggtgcgaagatggaaaaccatccgcatcacctctggtctctggtgggtgcgccagcg |
1654155 |
T |
|
| Q |
1037 |
gctgggtttcctcagattgtaacttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcaactcctatgtatggtttccatggtgtgtttct |
1136 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1654154 |
gctgggtttcctcagatcataacttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcatctcctctgtatggtttccatggtgtgtttga |
1654055 |
T |
|
| Q |
1137 |
ttggtatttagatatgttccttttatggctgttttcgagcttgtttttggtgggttaagttatttgtggttgat |
1210 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1654054 |
gtggtgttcagatatgttccttttatggctgttttcgagcttgtttttggtgggttaagttatttgtggttgat |
1653981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 636
Target Start/End: Complemental strand, 1659575 - 1658964
Alignment:
| Q |
20 |
atttaaatgcattgattaattacaacacaataaagagggtaaattattactagtgtatttggtggctcttcagcatttgattacaacacattggttctga |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1659575 |
atttaaatgcattgatta----caacacaataaagagggtaaattatta-----gtatttggtggctcttcagcatttgattacaacacattggttctga |
1659485 |
T |
|
| Q |
120 |
agatgattgaacttttggtggctcttcaacatttctagccacacacacattatcaggcgatgattctgtattattcacagaagaaattcaatcaaagttt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
1659484 |
agatgattgaacttttggtggctcttcaacatttctagccacacacacattatcaggcgatgattctgtattattcacagaagaaattcgaccaaagttt |
1659385 |
T |
|
| Q |
220 |
ggtggaaatcaatgcttcttatagcaagtatctacaatgtgaccttaacgtccataaaaggtgcaaagcccgctc-----accataagaaaaaagaggtt |
314 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1659384 |
ggtggaaatccatgcttcttataacaagtatctacaatgtgaccttaacatgcataaaaggtgcaaagcccgctcttataaccataagaaaaaagaggtt |
1659285 |
T |
|
| Q |
315 |
tctttttaccatgtaacttctttgagtcagaaaaattaacta-agatttggattcatcaagattaatgctttcaaagacaactttactctcttcttgcaa |
413 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1659284 |
tctttttaccatgaaacttc--tgagtcagaaaaattaacaagagatttggattcatcaagattaatgctttcaaagacaactttactctcttcttgcaa |
1659187 |
T |
|
| Q |
414 |
gaattaaaagtaaacacgattacgacatgataaaggttccatgnnnnnnnttgtgtttgaacgatggaaaattgatcattaagacccgtgaggatttgta |
513 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1659186 |
gagttaaaagtaaacacgattacgacatgataaaggttccatgaaaaaaattgtgtttgaacgacggaaaattgatcattaagacccgtgaggatttgta |
1659087 |
T |
|
| Q |
514 |
gtgcatgatcctctaaatgaaaatccttaggattatgcatagctaaacattggcactgatgatggcacgtacaagtagggagatgacaataactctctaa |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1659086 |
gtgcatgatcctctaaatgaaaatccttaggattaggcatagctaaacattggcactgatgatggcacgtacaagtagggagatgacaataactttctaa |
1658987 |
T |
|
| Q |
614 |
ttcgtcccaaataatctttaact |
636 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1658986 |
ttcgtcccaaataatctttaact |
1658964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 9e-64
Query Start/End: Original strand, 107 - 824
Target Start/End: Complemental strand, 28073329 - 28072593
Alignment:
| Q |
107 |
acattggttctgaagatgattgaacttttggtggctcttcaacatttctagccacacacacattatcaggcgatgattctgtattattcacagaagaaat |
206 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||| || |||||||| |||||| ||||||||| | |
|
|
| T |
28073329 |
acattggtcccgaagatgattgaacttttgatggctcttcaacgttttcagccacatgcacattatcaagcaatgattctacattattgacagaagaatt |
28073230 |
T |
|
| Q |
207 |
tcaatcaaagtttggtggaaatcaatgcttcttatagcaagtatctacaatgtgaccttaacgtccataaaaggtgcaaagcccgctc-----accataa |
301 |
Q |
| |
|
| | |||| |||||||| |||| |||||||||||| |||||||| ||| |||| || | |||||| |||| ||||| ||| |||| ||| || |
|
|
| T |
28073229 |
ttgaccaaaatttggtgggaatccatgcttcttataacaagtatcaacagtgtggccatggcgtccacaaaaagtgcagagcttgctcttatagccagaa |
28073130 |
T |
|
| Q |
302 |
gaaaaaagaggtttctttttaccatgtaacttctttgagtcagaaaaattaactaagatttggattcatcaagattaatgctttcaaagacaactttact |
401 |
Q |
| |
|
||||| || ||| ||||||| | ||||||||||| |||| | ||||| | |||| ||||||||||||||||| | |||||||| ||| ||||||| |
|
|
| T |
28073129 |
gaaaatgaagattttcctttaccagggaacttctttgaatcagcagaattatc-aagagttggattcatcaagatt-acactttcaaacacatctttact |
28073032 |
T |
|
| Q |
402 |
ctcttcttgcaagaattaaaagtaaacacgattacgacatgataaaggttcca-tgnnnnnnnttgtgtttgaacgatggaaaattgatcattaagaccc |
500 |
Q |
| |
|
||||||||| | || | | |||||||||||||| | |||| ||||||||||| | |||||| ||||| || ||||||||||||||||| || |
|
|
| T |
28073031 |
ctcttcttgtatgactaaggagtaaacacgattaaggcatggtaaaggttccattaacaacacttgtgtctgaacaattgaaaattgatcattaaggcct |
28072932 |
T |
|
| Q |
501 |
gtgaggatttgt---agtgcatgatcctctaaatgaaaatccttaggattatgcatagctaaacattggcactgatgatggcacgtacaagtagggagat |
597 |
Q |
| |
|
||||| | |||| ||| | |||||||||| ||| |||||| |||| ||| ||||||||||||||||||| ||| |||||||| ||||| ||| |
|
|
| T |
28072931 |
gtgagaaattgtggcagtactggatcctctaaccaaaagtccttaccattactcatggctaaacattggcactgataatgacacgtacatgtaggaagag |
28072832 |
T |
|
| Q |
598 |
gacaataactctctaattcgtcccaaataatctttaactcaatgaagtaatcggtaacggaaagtgaaccttg-tttcaaaggattgatgatgga----- |
691 |
Q |
| |
|
|| ||||||||| |||||||| |||| |||||| || | | |||||||||| ||||| | ||||||||||| |||||||| ||||||| |||| |
|
|
| T |
28072831 |
gatgataactctccaattcgtctcaaagaatcttcaatttagtgaagtaatcagtaacatatagtgaaccttgttttcaaagaattgatgctggaacgaa |
28072732 |
T |
|
| Q |
692 |
--ttagcaacatgaatgtgatcaaacatggaaaattgttcctttaactctttccaaacatcaacaacattcttattaaata----agactgaacaatctg |
785 |
Q |
| |
|
||||||| | ||||||||||| || ||||||||||| ||| || ||||||||||||||||||||||||| | |||||| ||| || ||||||| |
|
|
| T |
28072731 |
gcttagcaatacgaatgtgatcagacttggaaaattgtctcttcaattctttccaaacatcaacaacattctaaataaatatgatagattgtgcaatctg |
28072632 |
T |
|
| Q |
786 |
agaactaaccgagttcacgatccatgaatgaataagatt |
824 |
Q |
| |
|
||||||||| | ||| ||||| |||||| |||||||| |
|
|
| T |
28072631 |
agaactaacataattcgcgatctatgaatatataagatt |
28072593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 156 - 824
Target Start/End: Complemental strand, 28062855 - 28062168
Alignment:
| Q |
156 |
agccacacacacattatcaggcgatgattctgtattattcacagaagaaattcaatcaaagtttggtggaaatcaatgcttcttatagcaagtatctaca |
255 |
Q |
| |
|
||||||| |||||||||| || |||||||| |||||| ||||||||| || | |||| |||||||| |||| |||||||||||| |||||||| ||| |
|
|
| T |
28062855 |
agccacatgcacattatcaagcaatgattctacattattgacagaagaattttgaccaaaatttggtgggaatccatgcttcttataacaagtatcaaca |
28062756 |
T |
|
| Q |
256 |
atgtgaccttaacgtccataaaaggtgcaaagcccgctca-----ccataagaaaaaagaggtttctttttaccatgtaacttctttgagtcagaaaaat |
350 |
Q |
| |
|
|||| || | |||||| |||| ||||| ||| |||| ||| ||||||| || ||| ||||||| | ||||||||||| |||| | ||| |
|
|
| T |
28062755 |
gtgtggccatggcgtccacaaaaagtgcagagcttgctcttatagccagaagaaaatgaagattttcctttaccagggaacttctttgaatcagcagaat |
28062656 |
T |
|
| Q |
351 |
taactaagatttggattcatcaagattaatgctttcaaagacaactttactctcttcttgcaagaattaaaagtaaacacgattacgacatgataaaggt |
450 |
Q |
| |
|
|| | |||| |||||||||||||||||| |||||||| ||| |||||||||||||||| | || | | |||||||||||||| | |||| ||||||| |
|
|
| T |
28062655 |
tatc-aagagttggattcatcaagattaca-ctttcaaacacatctttactctcttcttgtatgactaaggagtaaacacgattaaggcatggtaaaggt |
28062558 |
T |
|
| Q |
451 |
tccatgnnnnnnn-ttgtgtttgaacgatggaaaattgatcattaagacccgtgaggatttgt---agtgcatgatcctctaaatgaaaatccttaggat |
546 |
Q |
| |
|
||||| |||||| ||||| || ||||||||||||||||| || ||||| | |||| ||| | |||||||||| ||| |||||| || |
|
|
| T |
28062557 |
tccattaacaacacttgtgtctgaacaattgaaaattgatcattaaggcctgtgagaaattgtggcagtactggatcctctaaccaaaagtccttaccat |
28062458 |
T |
|
| Q |
547 |
tatgcatagctaaacattggcactgatgatggcacgtacaagtagggagatgacaataactctctaattcgtcccaaataatctttaactcaatgaagta |
646 |
Q |
| |
|
|| ||| ||||||||||||||||||| ||| |||||||| ||||| ||| || ||||||||| |||||||| |||| |||||| || | | ||||||| |
|
|
| T |
28062457 |
tactcatggctaaacattggcactgataatgacacgtacatgtaggaagaggatgataactctccaattcgtctcaaagaatcttcaatttagtgaagta |
28062358 |
T |
|
| Q |
647 |
atcggtaacggaaagtgaaccttg-tttcaaaggattgatgatgga-------ttagcaacatgaatgtgatcaaacatggaaaattgttcctttaactc |
738 |
Q |
| |
|
||| ||||| | ||||||||||| |||||||| ||||||| |||| ||||||| | ||||||||||| || ||||||||||| ||| || || |
|
|
| T |
28062357 |
atcagtaacatatagtgaaccttgttttcaaagaattgatgctggaacgaagcttagcaatacgaatgtgatcagacttggaaaattgtctcttcaattc |
28062258 |
T |
|
| Q |
739 |
tttccaaacatcaacaacattcttattaaata----agactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatt |
824 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||| || |||||||||||||||| | ||| ||||| |||||| |||||||| |
|
|
| T |
28062257 |
tttccaaacatcaacaacattctaaataaatatgatagattgtgcaatctgagaactaacataattcgcgatctatgaatatataagatt |
28062168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 1059 - 1197
Target Start/End: Original strand, 26841590 - 26841725
Alignment:
| Q |
1059 |
cttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcaactcctatgtatggtttccatggtgtgtttctttggtatttagatatgttcctt |
1158 |
Q |
| |
|
|||||||| ||||| ||||| |||| | ||| ||||||| |||||| ||||| |||| ||||| |||||| |||||| |||| || ||||||||||| |
|
|
| T |
26841590 |
cttgcggttgtggttgttttcaaggcggtttctggtggtctcttcatctcctctgtacggttttcatggtttgtttcagtggtgtt---atatgttcctt |
26841686 |
T |
|
| Q |
1159 |
ttatggctgttttcgagcttgtttttggtgggttaagtt |
1197 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
26841687 |
ttatggctgttttcgagatagtttttggtgggttaagtt |
26841725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 930 - 1017
Target Start/End: Original strand, 26841401 - 26841489
Alignment:
| Q |
930 |
cccttctttccaaatttctttggttctcaatgtaaacggtggtggctggtggtgcgaagatggaa-aaccatccgcatcaccactggtc |
1017 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
26841401 |
cccttctttccaaattcttttggttcataatgtaaacggtggtggctgatggtgcgaatatggaacagccatccgcatcaccactggtc |
26841489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 1059 - 1197
Target Start/End: Original strand, 15049643 - 15049780
Alignment:
| Q |
1059 |
cttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcaactcctatgtatggtttccatggtgtgtttctttggtatttagatatgttcctt |
1158 |
Q |
| |
|
|||| ||| ||||||||||| |||||| ||| || ||||||||||| ||||| | || | |||||||||| ||||| |||| || ||||||||||| | |
|
|
| T |
15049643 |
cttgtggttgtggtggttttcaaggtggtttttgatggtttcttcatctcctctatacg-tttccatggtttgttttagtggttttcagatatgttccat |
15049741 |
T |
|
| Q |
1159 |
ttatggctgttttcgagcttgtttttggtgggttaagtt |
1197 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
15049742 |
ttatggctattttcgagctagtttttggtgggttaagtt |
15049780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 916 - 1010
Target Start/End: Original strand, 15049437 - 15049535
Alignment:
| Q |
916 |
cttatcttcgtcgccccttctttccaaatttctttggttctcaatgtaaa---cggtggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
1010 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
15049437 |
cttatctctgtcgccccttctttccaaattcctttggttcacaatgtaaacggcggtggtggctgaaggtgcgaagatggaacaaccatccgcatcacc |
15049535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 959 - 994
Target Start/End: Original strand, 12792810 - 12792845
Alignment:
| Q |
959 |
atgtaaacggtggtggctggtggtgcgaagatggaa |
994 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12792810 |
atgtaaatggtggtggctggtggtgcgaagatggaa |
12792845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 969 - 1010
Target Start/End: Original strand, 5745492 - 5745534
Alignment:
| Q |
969 |
tggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
1010 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
5745492 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
5745534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 969 - 1010
Target Start/End: Complemental strand, 22376 - 22334
Alignment:
| Q |
969 |
tggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
1010 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
22376 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
22334 |
T |
|
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