View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_10 (Length: 426)
Name: NF15715_low_10
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 131 - 269
Target Start/End: Original strand, 16645375 - 16645513
Alignment:
| Q |
131 |
catcaatatataaccctaggttgtttttgaaatggaccatttatatgtacacgtgtcaagcactgcaacgtggaagctgccacgtgtcccatcttttttg |
230 |
Q |
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| T |
16645375 |
catcaatatataaccctaggttgtttttgaaatagaccatttaaatgtacacgtgtcaagcactgcaacgtggaagctgccacgtgtttcatcttttttg |
16645474 |
T |
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| Q |
231 |
ttttgatcattcttagtgctcacacacctagggcacagg |
269 |
Q |
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| T |
16645475 |
ttttgatcattcttagtgcttacacacctagggcacagg |
16645513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 16645261 - 16645314
Alignment:
| Q |
12 |
tcttgtgctctcttcattttctacttgctctttcctttctttatgtgcctccat |
65 |
Q |
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| T |
16645261 |
tcttgtgttctcttctttttctacttgctcgttcctttctttatgtgcctccat |
16645314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 281 - 386
Target Start/End: Complemental strand, 26453426 - 26453321
Alignment:
| Q |
281 |
cactgactgcattagaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaag |
380 |
Q |
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| T |
26453426 |
cactgactgcattagaaaaagtacagaaaaggtaagaaaagcagagagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaag |
26453327 |
T |
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| Q |
381 |
taaaat |
386 |
Q |
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|||||| |
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| T |
26453326 |
taaaat |
26453321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
| Q |
304 |
cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat |
386 |
Q |
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| T |
47680406 |
cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat |
47680488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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