View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_13 (Length: 398)
Name: NF15715_low_13
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_13 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 1654340 - 1653981
Alignment:
| Q |
20 |
tttatgttgtcaacacaaaactttctctctctaaaaagtacctttctctggattctctctaactccttatcttcgtcgccccttctttccaaatttcttt |
119 |
Q |
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| T |
1654340 |
tttatgttgtcaacacaaaactttctctctctaaaaagtacctttctctggattctctctaactccttatctctgccgccccttctttccaaatttcttt |
1654241 |
T |
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| Q |
120 |
ggttctcaatgtaaacggtggtggctggtggtgcgaagatggaaaaccatccgcatcaccactggtctctggtgggtgcgtcgacggctgggtttcctca |
219 |
Q |
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| T |
1654240 |
ggttctcaatgtaaacggcggtgggtggtggtgcgaagatggaaaaccatccgcatcacctctggtctctggtgggtgcgccagcggctgggtttcctca |
1654141 |
T |
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| Q |
220 |
gattgtaacttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcaactcctatgtatggtttccatggtgtgtttctttggtatttagata |
319 |
Q |
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| T |
1654140 |
gatcataacttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcatctcctctgtatggtttccatggtgtgtttgagtggtgttcagata |
1654041 |
T |
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| Q |
320 |
tgttccttttatggctgttttcgagcttgtttttggtgggttaagttatttgtggttgat |
379 |
Q |
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| T |
1654040 |
tgttccttttatggctgttttcgagcttgtttttggtgggttaagttatttgtggttgat |
1653981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 26841590 - 26841725
Alignment:
| Q |
228 |
cttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcaactcctatgtatggtttccatggtgtgtttctttggtatttagatatgttcctt |
327 |
Q |
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| T |
26841590 |
cttgcggttgtggttgttttcaaggcggtttctggtggtctcttcatctcctctgtacggttttcatggtttgtttcagtggtgtt---atatgttcctt |
26841686 |
T |
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| Q |
328 |
ttatggctgttttcgagcttgtttttggtgggttaagtt |
366 |
Q |
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| T |
26841687 |
ttatggctgttttcgagatagtttttggtgggttaagtt |
26841725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 26841401 - 26841489
Alignment:
| Q |
99 |
cccttctttccaaatttctttggttctcaatgtaaacggtggtggctggtggtgcgaagatggaa-aaccatccgcatcaccactggtc |
186 |
Q |
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| T |
26841401 |
cccttctttccaaattcttttggttcataatgtaaacggtggtggctgatggtgcgaatatggaacagccatccgcatcaccactggtc |
26841489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 15049643 - 15049780
Alignment:
| Q |
228 |
cttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcaactcctatgtatggtttccatggtgtgtttctttggtatttagatatgttcctt |
327 |
Q |
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|||| ||| ||||||||||| |||||| ||| || ||||||||||| ||||| | || | |||||||||| ||||| |||| || ||||||||||| | |
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| T |
15049643 |
cttgtggttgtggtggttttcaaggtggtttttgatggtttcttcatctcctctatacg-tttccatggtttgttttagtggttttcagatatgttccat |
15049741 |
T |
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| Q |
328 |
ttatggctgttttcgagcttgtttttggtgggttaagtt |
366 |
Q |
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| T |
15049742 |
ttatggctattttcgagctagtttttggtgggttaagtt |
15049780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 15049437 - 15049535
Alignment:
| Q |
85 |
cttatcttcgtcgccccttctttccaaatttctttggttctcaatgtaaa---cggtggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
179 |
Q |
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| T |
15049437 |
cttatctctgtcgccccttctttccaaattcctttggttcacaatgtaaacggcggtggtggctgaaggtgcgaagatggaacaaccatccgcatcacc |
15049535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 12792810 - 12792845
Alignment:
| Q |
128 |
atgtaaacggtggtggctggtggtgcgaagatggaa |
163 |
Q |
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| T |
12792810 |
atgtaaatggtggtggctggtggtgcgaagatggaa |
12792845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 5745492 - 5745534
Alignment:
| Q |
138 |
tggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
179 |
Q |
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| T |
5745492 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
5745534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 22376 - 22334
Alignment:
| Q |
138 |
tggtggctggtggtgcgaagatggaa-aaccatccgcatcacc |
179 |
Q |
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| T |
22376 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacc |
22334 |
T |
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