View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_14 (Length: 396)
Name: NF15715_low_14
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 290134 - 290503
Alignment:
| Q |
11 |
atgaagaggatgtttctttgaaacgaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaaga |
110 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
290134 |
atgaagaggatgtttctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaaga |
290233 |
T |
|
| Q |
111 |
aactggtattgttggcggtcctgcgaaactcatttcaactgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
290234 |
aactggtattgttggcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatg |
290333 |
T |
|
| Q |
211 |
aatggtgtggctagaaagttctatgatcccaaatctaccaatttagttccatggcaaacacgtaatgtttctacaggagtaccaatgacttggtacaaga |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||| |
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| T |
290334 |
aatggtgtggctagaaagttctatgatcccaaatctaccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggtacaaga |
290433 |
T |
|
| Q |
311 |
ccactttcaagacccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaagaggaaaagc |
380 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
290434 |
ccactttcaagacccctgaaggttcaaaccttgtagtcctggatttgataggtcttcaaagaggaaaagc |
290503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 36 - 368
Target Start/End: Original strand, 279714 - 280046
Alignment:
| Q |
36 |
aggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttggcggtcctgcg |
135 |
Q |
| |
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|||| |||||||||||||||| |||||||||||| | || | |||||| ||| || | |||||||| |||||||||| |||||||| ||||||| |
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| T |
279714 |
aggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta |
279813 |
T |
|
| Q |
136 |
aaactcatttcaactgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctagaaagttctatg |
235 |
Q |
| |
|
|||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||| ||||||||||| |
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| T |
279814 |
aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctatg |
279913 |
T |
|
| Q |
236 |
atcccaaatctaccaatttagttccatggcaaacacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctgaaggttc |
335 |
Q |
| |
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|||||||| | |||| | ||||| |||| ||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||| | |
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| T |
279914 |
atcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtac |
280013 |
T |
|
| Q |
336 |
agaccttgtagtcctggatttgataggtcttca |
368 |
Q |
| |
|
| ||| |||||| |||| |||||||| ||||| |
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| T |
280014 |
aaaccccgtagtcttggacttgataggccttca |
280046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 24531861 - 24532227
Alignment:
| Q |
11 |
atgaagaggatgtttctttgaaacgaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaaga |
110 |
Q |
| |
|
|||| |||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
24531861 |
atgatgaggatatttccttgaaacgaggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaaga |
24531960 |
T |
|
| Q |
111 |
aactggtattgttggcggtcctgcgaaactcatttcaactgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatg |
210 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24531961 |
aactggtattgttgggggtcatgttaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatg |
24532060 |
T |
|
| Q |
211 |
aatggtgtggctagaaagttctatgatcccaaatctaccaatttagttccatggcaaacacgtaatgtttctacaggagtaccaatgacttggtacaaga |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
24532061 |
aatggtatggctagaaagttctatgatcccaaatct---aatggagttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaaga |
24532157 |
T |
|
| Q |
311 |
ccactttcaagacccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaagaggaaaagc |
380 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
24532158 |
ccactttcaagacccctgaagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagc |
24532227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 24525188 - 24525555
Alignment:
| Q |
11 |
atgaagaggatgtttctttgaaacgaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaaga |
110 |
Q |
| |
|
|||| |||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
24525188 |
atgatgaggatatttccttgaaacgaggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaaga |
24525287 |
T |
|
| Q |
111 |
aactggtattgttggcgg-tcctgcgaaactcatttcaactgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggat |
209 |
Q |
| |
|
||||||||||||||| || || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
24525288 |
aactggtattgttggggggtcatgtgaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggat |
24525387 |
T |
|
| Q |
210 |
gaatggtgtggctagaaagttctatgatcccaaatctaccaatttagttccatggcaaacacgtaatgtttctacaggagtaccaatgacttggtacaag |
309 |
Q |
| |
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||||||| |||||||||||||||| ||||||| ||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24525388 |
gaatggtatggctagaaagttctaagatcccagatcta---atggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaag |
24525484 |
T |
|
| Q |
310 |
accactttcaagacccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaagaggaaaagc |
380 |
Q |
| |
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|||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
24525485 |
accactttcaagacccctaaagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagc |
24525555 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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