View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_15 (Length: 384)
Name: NF15715_low_15
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_15 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 289784 - 290157
Alignment:
| Q |
11 |
gaaaaatatgtctaatcctaggtttagtatatttcttactgcatgtttatcattgttgtgtacttgttcatcaggaaacacactcaagtgggaatgggca |
110 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
289784 |
gaaaaatatgtctaatccaaggtttagtatatttcttactgcatgtttagcattgttgtgtacttgttcattaggaaacacactcaagtgggaatgggca |
289883 |
T |
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| Q |
111 |
tccgaaccaatgcaagacacattactaggcagagggacatttactgcatctaaacttttagatcaaaagaatgttactgctggaactagtgattatttat |
210 |
Q |
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| T |
289884 |
tccgaaccaatgcaagacaccttactaggcaaagggacatttactgcatctaaacttttaaatcaaaagaatgttaccgctggagctagtgattatttat |
289983 |
T |
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| Q |
211 |
ggtacatgaccgaagtagtcgtaaatgacacaaaaatttgggggaaagcaaggctgcacgtcgatacaaaaggtcctattctttattcatatattaatgg |
310 |
Q |
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| T |
289984 |
ggtacatgaccgaagtagtcgtaaatgacacaaaaatttggggaaaagcaaggctgcacgtcgatacaaaaggtcctattctttattcatatattaatgg |
290083 |
T |
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| Q |
311 |
attctggtggggtgtagaaggtggtagcccgagtaaacctggtttcgtatatgaagaggatgtttctttgaaac |
384 |
Q |
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| T |
290084 |
attttggtggggcgtagaaggtggtagcccgagtaaacctggttttgtatatgaagaggatgtttctttgaaac |
290157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 104 - 313
Target Start/End: Original strand, 279432 - 279641
Alignment:
| Q |
104 |
atgggcatccgaaccaatgcaagacacattactaggcagagggacatttactgcatctaaacttttagatcaaaagaatgttactgctggaactagtgat |
203 |
Q |
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| T |
279432 |
atggacatccgacccaatggaagacacttttcaaggtaaagggacatttactgcatctcaacttttagatcaaaagagtgttaccgttggtgctagtgat |
279531 |
T |
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| Q |
204 |
tatttatggtacatgaccgaagtagtcgtaaatgacacaaaaatttgggggaaagcaaggctgcacgtcgatacaaaaggtcctattctttattcatata |
303 |
Q |
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| T |
279532 |
tacttgtggtacatgaccgaagttgtcgtaaatgatacaaacacttgggggaaagcaaaggtgcaagtgaatacaacaggtcatattctttatttattta |
279631 |
T |
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| Q |
304 |
ttaatggatt |
313 |
Q |
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| T |
279632 |
ttaatggatt |
279641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 278108 - 278179
Alignment:
| Q |
13 |
aaaatatgtctaatcctaggtttagtatatttcttactgcatgtttatcattgttgtgtacttgttcatcag |
84 |
Q |
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| T |
278108 |
aaaatatgtctaatgctatgtttgggacatttcttattgcatgcttagcattgttgtacacttgttcatcag |
278179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 24524838 - 24525211
Alignment:
| Q |
11 |
gaaaaatatgtctaatcctaggtttagtatatttcttactgcatgtttatcattgttgtgtacttgttcatcaggaaacacactcaagtgggaatgggca |
110 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
24524838 |
gaaaaatatgtctaatcctaggtttcgtacatttcttactgcatgtttagcattattgtgtacttgttcattaggaaacccactcaagtgggaatgggca |
24524937 |
T |
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| Q |
111 |
tccgaaccaatgcaagacacattactaggcagagggacatttactgcatctaaacttttagatcaaaagaatgttactgctggaactagtgattatttat |
210 |
Q |
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|| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24524938 |
tctgaaccaatgcaagacaccttaccaggcaaagggacatttactgcatctaaacttttagatcaaaagaatgttactgctggagctagtgattatttat |
24525037 |
T |
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| Q |
211 |
ggtacatgaccgaagtagtcgtaaatgacacaaaaatttgggggaaagcaaggctgcacgtcgatacaaaaggtcctattctttattcatatattaatgg |
310 |
Q |
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| T |
24525038 |
ggtacatgaccgaagtagtcgtaaatgacacaactgtttgggggaaatcaacactgcaagtgaatgcaaaaggccctattatttattcatatattaatgg |
24525137 |
T |
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| Q |
311 |
attctggtggggtgtagaaggtggtagcccgagtaaacctggtttcgtatatgaagaggatgtttctttgaaac |
384 |
Q |
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| T |
24525138 |
attttggtggggtgtatatgatagtatcccgagtacacatagtttcgtatatgatgaggatatttccttgaaac |
24525211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 24531511 - 24531884
Alignment:
| Q |
11 |
gaaaaatatgtctaatcctaggtttagtatatttcttactgcatgtttatcattgttgtgtacttgttcatcaggaaacacactcaagtgggaatgggca |
110 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
24531511 |
gaaaaatatgtctaatcctaggtttcgtacatttcttactgcatgtttagcattattgtgtacttgttcattaggaaacccactcaagtgggaatgggca |
24531610 |
T |
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| Q |
111 |
tccgaaccaatgcaagacacattactaggcagagggacatttactgcatctaaacttttagatcaaaagaatgttactgctggaactagtgattatttat |
210 |
Q |
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| T |
24531611 |
tctgaaccaatgcaagacaccttactaggccaagggacatttactgcatctaaacttttagatcaaaagaatgttactgctggagctagtgattatttat |
24531710 |
T |
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| Q |
211 |
ggtacatgaccgaagtagtcgtaaatgacacaaaaatttgggggaaagcaaggctgcacgtcgatacaaaaggtcctattctttattcatatattaatgg |
310 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| || || ||||||| |||||| ||||||| ||||||||||| |
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| T |
24531711 |
ggtacatgaccgaagtagtcgtaaatgacacaaccgtttgggggaaatcaacactgcaagtgaatgcaaaaggccctattatttattcgtatattaatgg |
24531810 |
T |
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| Q |
311 |
attctggtggggtgtagaaggtggtagcccgagtaaacctggtttcgtatatgaagaggatgtttctttgaaac |
384 |
Q |
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||| |||||||||||| | | | || |||||||| || | ||||||||||||| |||||| |||| ||||||| |
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| T |
24531811 |
attttggtggggtgtatatgatagtgtcccgagtacacgtagtttcgtatatgatgaggatatttccttgaaac |
24531884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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