View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_17 (Length: 349)
Name: NF15715_low_17
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 11194199 - 11194509
Alignment:
| Q |
21 |
ctttcaatcagaaatatcagtactacgtagctctcattctacataaatgcgactcaaatgacaaaaggaacaggctaaaatcaattttaaaaaccttctt |
120 |
Q |
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| T |
11194199 |
ctttcaatcagaaatatcagtattacgtagctctcattctacataaatgcgactcaaatgacaaaaggaacaggctaaaatcaattttaaaaaccttctt |
11194298 |
T |
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| Q |
121 |
agcacgctttactgcaacaatggttccatccaagagtttggtcttgtagacagccccaaaaccaccttgaccaatcttgaaagaaggagagaagtttctt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11194299 |
agcacgctttactgcaacaatggttccatccaagagtttggtcttgtagacagccccaaaaccaccttgaccaatcttgaaagaaggagagaagtttctt |
11194398 |
T |
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| Q |
221 |
gtggcttggatgatttcctccatggtgtacttgacaatgccagactcattcccctggattgtgttgtataaaccaatgttggtacctcggtttgagccac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11194399 |
gtggcttggatgatttcctccatggtgtacttgacaatgccagactcattcccctggattgtgttgtataaaccaatgttggtacctcggtttgagccac |
11194498 |
T |
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| Q |
321 |
gccctctctga |
331 |
Q |
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||||||||||| |
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| T |
11194499 |
gccctctctga |
11194509 |
T |
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