View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15715_low_19 (Length: 340)
Name: NF15715_low_19
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 102 - 325
Target Start/End: Original strand, 36522119 - 36522342
Alignment:
| Q |
102 |
caatcaacttaaagcttccatttattgctaacccttaacgtatcttccaatatatgttgacagattcccacttttttggtcctcaaatccctttacacat |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36522119 |
caatcaacttaaagcttcaatttattgctaacccttaacgtatcttccaatatatgttgacatattcccacttttttggtcctcaaatccctttacacat |
36522218 |
T |
|
| Q |
202 |
tcaaataacgctattctaggaccaaaaagtacaagtatacatgatctttcacagcccactttacactaacttcaatgttaatagttccttcttaccaaag |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36522219 |
tcaaataacgctattctaggaccaaaaagaacaagtatacatgatctttcacaacccactttacactaacttcaatgctaatagttccttcttaccaaaa |
36522318 |
T |
|
| Q |
302 |
catcggaaaaagcccatgatgatg |
325 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
36522319 |
cattggaaaaagcccatgatgatg |
36522342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36522018 - 36522048
Alignment:
| Q |
1 |
aactaaccaaatggccattgaatagtgacca |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36522018 |
aactaaccaaatggccattgaatagtgacca |
36522048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University