View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_2 (Length: 728)
Name: NF15715_low_2
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 19 - 728
Target Start/End: Original strand, 11193510 - 11194219
Alignment:
| Q |
19 |
atgcagtatacaacaactataagattctgttaaccattatatatgtccttggggacaaacaagtgagtaattttccgtgactgaaatgagttgcttgatg |
118 |
Q |
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| T |
11193510 |
atgcagtatacaacaactataagattctgttaaccattatatatgtccttggggacaaacaagtgagtaattttccgtgactgaaatgagttgcttgatg |
11193609 |
T |
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| Q |
119 |
nnnnnnngttatatacccatatacatatgaagataggtgagagcatgcgatacatcaattgcaatgtctagacgagcagcgaggtccagaacgtttccat |
218 |
Q |
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| T |
11193610 |
aaaaaaagttatatacccatatacatatgaagataggtgagagcatgcgatacatcaattgcaatgtctagacgagcagcaaggtccagaacgtttccat |
11193709 |
T |
|
| Q |
219 |
gaatgcctgcaacgatcctttgattaagtagtaggcacaaaaagccaatgcctaagcattaaggcaagagcaagggcggaaaaccacaaaggaataaaat |
318 |
Q |
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| T |
11193710 |
gaatgcctgtaacgatcctttgattaagtagtaggcacaaaaagccaatgcctaagcattaaggcaagagcaagggcggaaaaccacaaaggaataaaat |
11193809 |
T |
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| Q |
319 |
aactgaaagggcagaaaaactcacaatctaaatgctctcggagggttccattaggaacatactccacaacaacgattctttcatccccttgctccaaata |
418 |
Q |
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| T |
11193810 |
aactgaaagggcagaaaaactcacaatctaaatgctctcggagggttccattaggaacatactccacaacaacgattctttcatccccttgctccaaata |
11193909 |
T |
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| Q |
419 |
tccatagaactttaccaagttcaaatgttcaacccttgatagtgtttggacctcgctctggaactcagaacctaaatttttctcgtgtacactctgcaaa |
518 |
Q |
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| T |
11193910 |
tccatagaactttaccaagttcaaatgttcaacccttgatagtgtttggacctcgctctggaactcagaacctaaatttttctcatgtacactctgtaaa |
11194009 |
T |
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| Q |
519 |
gaaaaagttaattaaccacaataacatctggatgcttacggaataacactatcgttctatgaagcagaaacactaacactggacacgacattggcacttg |
618 |
Q |
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| T |
11194010 |
gaaaaaggtaattaaccacaataacatctggatgcttactgaataacactatcgttctatgaagcacaaacactaacattggacacaacattggcacttg |
11194109 |
T |
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| Q |
619 |
acatcagtaataatttgagaaaataatttaacttaatgtaataacatgtattggtgtcgatcaccaacccgtgtcagacaccagacacactttcaatcag |
718 |
Q |
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| T |
11194110 |
acatcagtaataatttgagaaaataatttaacttaatgtaataacatgtattggtgtcgatcaccaacccgtgtcagacaccagacacgctttcaatcag |
11194209 |
T |
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| Q |
719 |
aaatatcagt |
728 |
Q |
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| T |
11194210 |
aaatatcagt |
11194219 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 676
Target Start/End: Complemental strand, 42868088 - 42868037
Alignment:
| Q |
625 |
gtaataatttgagaaaataatttaacttaatgtaataacatgtattggtgtc |
676 |
Q |
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| T |
42868088 |
gtaataatttgagaaattaaattaactgaatgtaatcacatgtattagtgtc |
42868037 |
T |
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