View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_21 (Length: 328)
Name: NF15715_low_21
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 2479571 - 2479767
Alignment:
| Q |
18 |
atggcaatcata--tatgacatataatacataataatccttaattttttatacaattaagaagttaagtttcagaaaaacttttatttactaatatactt |
115 |
Q |
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| T |
2479571 |
atggcaatcatacatatgacatataatacataataatccttaattttttatacaattaagaagttaagtttcagaaaaacttttatttactaatatactt |
2479670 |
T |
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| Q |
116 |
ttttgaggggcattaatagtaatactagatagtggaatgtaggaaatctcactacattaattattaaccggtatttttaatcatccaatatttctctttt |
215 |
Q |
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| T |
2479671 |
ttttgaggggcattaatagtaatactagatcat---atgtaggaaatcgcactacattaattatcaaccggtatctttaatcatccaatatttttctttt |
2479767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 2479869 - 2479977
Alignment:
| Q |
218 |
cgattgacaaaaatgttttgaatgattaaagattcatccggcgaataaggctagatttcctacatcccaatatctctaatacattgataaatcttaataa |
317 |
Q |
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||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||| |
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| T |
2479869 |
cgattgacaaaaatgtt--ggatgattaaagatttatccggcgaataagtttagatttcctacatcccactgtctctagtacattgataaatcttaataa |
2479966 |
T |
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| Q |
318 |
gattagtgctt |
328 |
Q |
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| T |
2479967 |
gattagagctt |
2479977 |
T |
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