View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15715_low_22 (Length: 303)

Name: NF15715_low_22
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15715_low_22
NF15715_low_22
[»] chr5 (2 HSPs)
chr5 (38-208)||(2339846-2340016)
chr5 (108-161)||(12576969-12577021)
[»] chr8 (4 HSPs)
chr8 (41-208)||(7749887-7750057)
chr8 (108-166)||(4011199-4011256)
chr8 (130-166)||(38178390-38178426)
chr8 (130-166)||(45512625-45512661)
[»] chr7 (1 HSPs)
chr7 (133-162)||(29229614-29229643)
[»] chr4 (4 HSPs)
chr4 (108-161)||(47147494-47147546)
chr4 (130-166)||(31339651-31339687)
chr4 (109-161)||(49987529-49987580)
chr4 (109-161)||(53540411-53540462)
[»] chr3 (1 HSPs)
chr3 (130-166)||(31261072-31261108)
[»] chr1 (1 HSPs)
chr1 (130-166)||(6025721-6025757)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 2340016 - 2339846
Alignment:
Q  38 cacgcattatcccattaggtgagtggctagatggatcaatcacgtcaataactaaaccatcgaaatataaatctttcttaatagttttagcctatagttt 137  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2340016 cacgcagtatcccattaggtgagtggctagatggatcgatcacgtcaataactaaaccattgaaatataaatctttcttaatagttttagcctatagttt 2339917  T
Q  138 ttcttggtcttcctctgcctctagcgattaggctgcacttcataatcaattctcctactatacaacctatg 208  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2339916 ttcttggtcttcctctgcctctagcgattaggctgcactccataatcaattctcctactatacaacctatg 2339846  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 12576969 - 12577021
Alignment:
Q  108 atctttcttaatagttttagcctatagtttttcttggtcttcctctgcctctag 161  Q
    ||||||||||||||||| | | | |||||||||| |||||||||||||||||||    
T  12576969 atctttcttaatagttt-atcttgtagtttttctaggtcttcctctgcctctag 12577021  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 208
Target Start/End: Complemental strand, 7750057 - 7749887
Alignment:
Q  41 gcattatcccattaggtgagtg-gctagatggatcaatcacgtcaataactaaaccatcgaaatataaatctttcttaatagttttagcctatagttttt 139  Q
    ||||||||  |||||||||||  |||| ||||||||||||  || ||| ||||||||  || || ||||||||||||||||||||| ||||||||||||     
T  7750057 gcattatcttattaggtgagtcagctatatggatcaatcatatctatagctaaaccactgacatctaaatctttcttaatagtttttgcctatagttttg 7749958  T
Q  140 cttggtcttcctctgcctctagcgattaggctgcacttca--taatcaattctcctactatacaacctatg 208  Q
    |||||| ||||||||||||| ||||||||| ||| |  ||  ||||||| |||||||||| | ||||||||    
T  7749957 cttggtattcctctgcctctggcgattaggttgcccaccatctaatcaactctcctactacagaacctatg 7749887  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 4011256 - 4011199
Alignment:
Q  108 atctttcttaatagttttagcctatagtttttcttggtcttcctctgcctctagcgatt 166  Q
    |||||||||||||||||   | |||||||||||| |||||||||||| |||||||||||    
T  4011256 atctttcttaatagtttct-cttatagtttttctaggtcttcctctgtctctagcgatt 4011199  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 38178390 - 38178426
Alignment:
Q  130 tatagtttttcttggtcttcctctgcctctagcgatt 166  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  38178390 tatagtttttctaggtcttcctctacctctagcgatt 38178426  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 45512625 - 45512661
Alignment:
Q  130 tatagtttttcttggtcttcctctgcctctagcgatt 166  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  45512625 tatagtttttctaggtcttcctctgcctctagtgatt 45512661  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 29229614 - 29229643
Alignment:
Q  133 agtttttcttggtcttcctctgcctctagc 162  Q
    ||||||||||||||||||||||||||||||    
T  29229614 agtttttcttggtcttcctctgcctctagc 29229643  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 47147546 - 47147494
Alignment:
Q  108 atctttcttaatagttttagcctatagtttttcttggtcttcctctgcctctag 161  Q
    |||||||||||||||||   | |||||||||||| |||||||||||||||||||    
T  47147546 atctttcttaatagtttcttc-tatagtttttctaggtcttcctctgcctctag 47147494  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 31339687 - 31339651
Alignment:
Q  130 tatagtttttcttggtcttcctctgcctctagcgatt 166  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  31339687 tatagtttttctaggtcttcctctgcctctagtgatt 31339651  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 49987580 - 49987529
Alignment:
Q  109 tctttcttaatagttttagcctatagtttttcttggtcttcctctgcctctag 161  Q
    ||||||||||||||||   | |||||||||||| |||||||||||||||||||    
T  49987580 tctttcttaatagtttct-cttatagtttttctaggtcttcctctgcctctag 49987529  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 53540462 - 53540411
Alignment:
Q  109 tctttcttaatagttttagcctatagtttttcttggtcttcctctgcctctag 161  Q
    |||||| ||||||||| | | |||||||||||| |||||||||||||||||||    
T  53540462 tctttcctaatagttt-atcttatagtttttctaggtcttcctctgcctctag 53540411  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 31261072 - 31261108
Alignment:
Q  130 tatagtttttcttggtcttcctctgcctctagcgatt 166  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  31261072 tatagtttttctaggtcttcctctgcctctagtgatt 31261108  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 6025757 - 6025721
Alignment:
Q  130 tatagtttttcttggtcttcctctgcctctagcgatt 166  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  6025757 tatagtttttctaggtcttcctctgcctctagtgatt 6025721  T

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