View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_23 (Length: 293)
Name: NF15715_low_23
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 27432585 - 27432844
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27432585 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcact |
27432684 |
T |
|
| Q |
118 |
tggagttctgaaggacacacaccattaatgttccccggacaactggaggttttgcagtcaccactcccaccttgtggcgttaccgacattggtacgttga |
217 |
Q |
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||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
27432685 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27432784 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtctgttgctaccgttattt |
277 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |
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| T |
27432785 |
atccatccacattgctcacatcatagaaatcttgtcccccgtttgttgctacggttattt |
27432844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 27214876 - 27215135
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcact |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27214876 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcact |
27214975 |
T |
|
| Q |
118 |
tggagttctgaaggacacacaccattaatgttccccggacaactggaggttttgcagtcaccactcccaccttgtggcgttaccgacattggtacgttga |
217 |
Q |
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||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
27214976 |
tggagctctgaaggacacacaacattgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27215075 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtctgttgctaccgttattt |
277 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
27215076 |
atccatccacattgctcacatcatagaaatcttgtcccccgtttgttgctacggttattt |
27215135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 27444025 - 27443766
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27444025 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcact |
27443926 |
T |
|
| Q |
118 |
tggagttctgaaggacacacaccattaatgttccccggacaactggaggttttgcagtcaccactcccaccttgtggcgttaccgacattggtacgttga |
217 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
27443925 |
tggagctctgaaggacacacaacattgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27443826 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtctgttgctaccgttattt |
277 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
27443825 |
atccatccacattgctcacatcttagaaatcttgtcccccgtttgttgctacggttattt |
27443766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 27220838 - 27221097
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcact |
117 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||| ||| || ||| |
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|
| T |
27220838 |
ttcttcagtattgaaatctccacgacaacaatatttatcttcatttaaagccaaacaagcactcttacaggcaatcacactcccatcagtaccaataact |
27220937 |
T |
|
| Q |
118 |
tggagttctgaaggacacacaccattaatgttccccggacaactggaggttttgcagtcaccactcccaccttgtggcgttaccgacattggtacgttga |
217 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
27220938 |
tggagctctgaagggcacacaacattaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttga |
27221037 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgtctgttgctaccgttattt |
277 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
27221038 |
atccgtccacattgctcacatcgtagaagtcttgtcccccgtctgttgctaccgttattt |
27221097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 27207505 - 27207746
Alignment:
| Q |
18 |
ttcttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcact |
117 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
27207505 |
ttcttcagtattgaaatctccacgacaacaatatttatcttcctttaaagccaaacaagcgctcttacaagcaaacacactcccatcagaaccaatcacc |
27207604 |
T |
|
| Q |
118 |
tggagttctgaaggacacacaccattaatgttccccggacaactggaggttttgcagtcaccactcccaccttgtggcgttaccgacattggtacgttga |
217 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |||| ||||| || || |||| |
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| T |
27207605 |
tggagctctgaaggacacacaacattaatgttcctaggacaactagcggttttgcagtcaccactcccaccttgtggcattacggacatgggcacattga |
27207704 |
T |
|
| Q |
218 |
atccatccacattgctcacatcgtagaaatcttgtcccccgt |
259 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27207705 |
acccatcaacattgctcacatcgtagaaatcttgtcccccgt |
27207746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 27409757 - 27409991
Alignment:
| Q |
20 |
cttcggtattgtaatctccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcacttg |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| || |||||||| ||||| |||||||||||||| |||||||||||||||||| | ||||| |
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|
| T |
27409757 |
cttcggtattgtaacttccacgacaacaatattgatctgtattaaaagccaagcaagcactcttacaagcaacgacactcccatcagaaccttttacttg |
27409856 |
T |
|
| Q |
120 |
gagttctgaaggacacacaccattaatgttccccggacaactggaggttttgcagtcaccactcccaccttgtggcgttaccgacattggtacgttgaat |
219 |
Q |
| |
|
||||||| ||||||||| | || || || | |||||||| | || |||||| ||| ||||||||||||| ||||| | ||||| |||||||| |
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|
| T |
27409857 |
aagttctgcgggacacacagcgttgatatttgctggacaactagcggctttgcaagggccattcccaccttgtggagttacaaaaattggcacgttgaac |
27409956 |
T |
|
| Q |
220 |
ccatccacattgctcacatcgtagaaatcttgtcc |
254 |
Q |
| |
|
|| || || |||||||||||||||||||||||||| |
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|
| T |
27409957 |
ccgtcaacgttgctcacatcgtagaaatcttgtcc |
27409991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 36 - 254
Target Start/End: Original strand, 27388817 - 27389035
Alignment:
| Q |
36 |
tccacgacaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcacttggagttctgaaggacac |
135 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||| |||||||||||||| ||||| |||||||||||| | | ||| || || | |||||| |
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|
| T |
27388817 |
tccacgacaacaatattgatcggtattaaaagccaaacaagcactcttacaagcaacgacacttccatcagaaccttttaattgaagctccgcgggacac |
27388916 |
T |
|
| Q |
136 |
acaccattaatgttccccggacaactggaggttttgcagtcaccactcccaccttgtggcgttaccgacattggtacgttgaatccatccacattgctca |
235 |
Q |
| |
|
||| || ||||| | ||||| || |||| |||||| || ||||| || |||||||| ||||| |||||||| |||||||| || || || ||||||| |
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|
| T |
27388917 |
acagagttgatgtttgctggacagctagaggatttgcaatcgccacttccgccttgtggagttacggacattggcacgttgaaaccgtcaacgttgctca |
27389016 |
T |
|
| Q |
236 |
catcgtagaaatcttgtcc |
254 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27389017 |
catcgtagaaatcttgtcc |
27389035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 20952530 - 20952617
Alignment:
| Q |
63 |
taaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcacttggagttctgaaggacacacaccattaatgttc |
150 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||| |
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|
| T |
20952530 |
taaagccaaacaagcgcttttacaagccaccacactcccatcagaaccggtcacttggagctcttaaggacacacaatattaatgttc |
20952617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 20952648 - 20952716
Alignment:
| Q |
190 |
tgtggcgttaccgacattggtacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccg |
258 |
Q |
| |
|
|||||||||| ||||||| || ||||| | ||||||||||||||||| || ||||||||||||||| |
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|
| T |
20952648 |
tgtggcgttattgacattgacacattgaacctgtccacattgctcacatcatataaatcttgtcccccg |
20952716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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