View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15715_low_26 (Length: 246)

Name: NF15715_low_26
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15715_low_26
NF15715_low_26
[»] chr7 (11 HSPs)
chr7 (3-232)||(29006347-29006575)
chr7 (3-214)||(29007035-29007247)
chr7 (55-152)||(34368114-34368212)
chr7 (3-118)||(29314581-29314696)
chr7 (3-118)||(41224776-41224891)
chr7 (2-100)||(44896045-44896143)
chr7 (62-130)||(30916418-30916486)
chr7 (37-116)||(23632957-23633034)
chr7 (56-134)||(48955159-48955237)
chr7 (37-70)||(25137907-25137940)
chr7 (62-130)||(5004246-5004314)
[»] chr4 (16 HSPs)
chr4 (3-214)||(31910554-31910764)
chr4 (37-179)||(32449351-32449492)
chr4 (37-155)||(31911369-31911482)
chr4 (37-155)||(32450119-32450232)
chr4 (55-152)||(17978314-17978412)
chr4 (55-152)||(37142611-37142709)
chr4 (62-119)||(34372212-34372269)
chr4 (55-130)||(22061381-22061457)
chr4 (61-118)||(32893662-32893719)
chr4 (2-118)||(31634102-31634218)
chr4 (55-130)||(20351233-20351308)
chr4 (55-97)||(23424522-23424564)
chr4 (56-118)||(33409371-33409433)
chr4 (3-117)||(47377533-47377646)
chr4 (61-118)||(49346164-49346221)
chr4 (55-119)||(39429276-39429340)
[»] chr8 (12 HSPs)
chr8 (3-118)||(41092172-41092287)
chr8 (61-154)||(5875079-5875172)
chr8 (65-146)||(8181442-8181522)
chr8 (3-100)||(35759190-35759287)
chr8 (37-100)||(41348178-41348241)
chr8 (89-151)||(788374-788435)
chr8 (55-97)||(42346060-42346102)
chr8 (61-118)||(5873222-5873279)
chr8 (37-70)||(30846478-30846511)
chr8 (37-97)||(7054124-7054183)
chr8 (55-95)||(7054774-7054814)
chr8 (55-119)||(42345445-42345509)
[»] chr3 (6 HSPs)
chr3 (37-133)||(32321331-32321425)
chr3 (41-134)||(20313348-20313441)
chr3 (62-130)||(44406255-44406323)
chr3 (63-130)||(47480566-47480633)
chr3 (55-97)||(43768714-43768756)
chr3 (37-97)||(45298314-45298372)
[»] chr2 (10 HSPs)
chr2 (55-152)||(2992053-2992151)
chr2 (3-118)||(16426553-16426668)
chr2 (61-118)||(17946899-17946956)
chr2 (55-97)||(20991974-20992016)
chr2 (37-70)||(6609584-6609617)
chr2 (37-74)||(6610021-6610058)
chr2 (37-74)||(15562018-15562055)
chr2 (37-70)||(16903431-16903464)
chr2 (111-146)||(16930003-16930039)
chr2 (111-146)||(16987491-16987527)
[»] chr1 (8 HSPs)
chr1 (55-152)||(51609432-51609530)
chr1 (62-130)||(29334869-29334937)
chr1 (55-130)||(36385723-36385798)
chr1 (55-95)||(42383770-42383810)
chr1 (37-78)||(17151853-17151894)
chr1 (61-125)||(41134558-41134623)
chr1 (55-119)||(50427474-50427538)
chr1 (55-119)||(50428079-50428143)
[»] chr5 (8 HSPs)
chr5 (55-152)||(39950232-39950330)
chr5 (37-154)||(43588326-43588440)
chr5 (62-130)||(18153356-18153424)
chr5 (55-97)||(1969830-1969872)
chr5 (37-95)||(9923422-9923479)
chr5 (37-70)||(3596275-3596308)
chr5 (37-74)||(8320908-8320945)
chr5 (37-70)||(42655722-42655755)
[»] scaffold0155 (1 HSPs)
scaffold0155 (3-118)||(17339-17454)
[»] chr6 (4 HSPs)
chr6 (85-142)||(3802145-3802201)
chr6 (86-133)||(3802729-3802776)
chr6 (37-96)||(1034755-1034814)
chr6 (37-117)||(24126006-24126085)
[»] scaffold0129 (1 HSPs)
scaffold0129 (37-118)||(42520-42601)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 29006347 - 29006575
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctat 102  Q
    |||||||||||||||||||||||||||       ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29006347 ggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtaccaattttatcatggtctat 29006446  T
Q  103 ccacactatattttttctctttctctttcaccattttcttcaacctccatcagtgtcctcctctccacttctctaccttttctcataaacccccaacaca 202  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29006447 ccacactatattttttctctttctctttcaccatcttcttcaacctccatcactgtcctcctctccacttctctaccttttctcataaacccccaacaca 29006546  T
Q  203 gtcaccactaaaacaaacttaacatattgt 232  Q
    ||||||| | ||||||||||||||||||||    
T  29006547 gtcacca-ttaaacaaacttaacatattgt 29006575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 29007247 - 29007035
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctat 102  Q
    |||| ||||||||||||||||||||||       ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29007247 ggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtactaattttatcatggtctat 29007148  T
Q  103 ccacactatatttttt-ctctttctctttcaccattttcttcaacctccatcagtgtcctcctctccacttctctaccttttctcataaacccccaacac 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  29007147 ccacactatatttttttctctttctctttcaccattttcttcaacctccatcattgttctcctctccacttctctaccttttctcataaacccccaacac 29007048  T
Q  202 agtcaccactaaa 214  Q
    |||||||||||||    
T  29007047 agtcaccactaaa 29007035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 34368212 - 34368114
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactata-ttttttctctttctctttcaccattttcttcaacctccat 152  Q
    |||||| ||||||||||||||||| |||  ||||||||||||||||||| | || ||| |||||||||||||||| ||||  | | |||||||||||||    
T  34368212 tttttagccattagattaaagaggtgtattaattttatcatggtctatctatacaatatttttttctctttctctctcacattgtccttcaacctccat 34368114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 29314581 - 29314696
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatggtcta 101  Q
    |||||||||||||||| ||||||||||       ||||||||| ||| |||||||||||||||| ||||||| ||| | || |||||||||||||||||     
T  29314581 ggtgccatttaatttgagaaaggcttgtttttttccaccatgggaaagttagtttttaaccatttgattaaatagg-gaacacaattttatcatggtctt 29314679  T
Q  102 tccacactatatttttt 118  Q
    || ||||  ||||||||    
T  29314680 tcaacacactatttttt 29314696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 41224891 - 41224776
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatggtcta 101  Q
    ||||||||||||||||||||||||||        ||||||||| ||| |||||||||||||||| ||||||| ||| | || |||||||||||||||||     
T  41224891 ggtgccatttaatttgggaaaggcttattttttcccaccatgggaaagttagtttttaaccatttgattaaatagg-gaacacaattttatcatggtctt 41224793  T
Q  102 tccacactatatttttt 118  Q
    || ||||  ||||||||    
T  41224792 tcaacacactatttttt 41224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 44896045 - 44896143
Alignment:
Q  2 gggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatggtct 100  Q
    ||||||| ||||||||||||||| || |       ||||||||| ||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  44896045 gggtgccgtttaatttgggaaagactagtttttccccaccatgggaaagttagtttttaaccattagattaaatagg-gtacacaattttatcatggtct 44896143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 30916486 - 30916418
Alignment:
Q  62 ccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctcttt 130  Q
    |||||||||||||||||||||  ||||||||||||| ||| | |||| |||||||||  ||||||||||    
T  30916486 ccattagattaaagaggagtattaattttatcatggactacctacaccatatttttttcctttctcttt 30916418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 23632957 - 23633034
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatatttt 116  Q
    ||||||||||||| ||  ||||| ||||||||||||||||||||||   ||||||| |||||||  ||||||| ||||||    
T  23632957 ccaccatggaaaagtt--ttttttaccattagattaaagaggagtatagattttatgatggtctgcccacactttatttt 23633034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 48955237 - 48955159
Alignment:
Q  56 ttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcacc 134  Q
    |||| ||||| |||||||||||| |||   || |||| |||||||| | ||||| |||||||| |||||||||||||||    
T  48955237 tttttaccatcagattaaagaggtgtattgatcttataatggtctacctacactttattttttttctttctctttcacc 48955159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 25137940 - 25137907
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagat 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  25137940 ccaccatgggaaaattagtttttaaccattagat 25137907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 5004246 - 5004314
Alignment:
Q  62 ccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctcttt 130  Q
    |||||| ||||||||| ||||  |||||||||||||  |||| |||| |||||||||  ||||||||||    
T  5004246 ccattaaattaaagagaagtattaattttatcatggattatctacaccatatttttttcctttctcttt 5004314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 31910554 - 31910764
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctat 102  Q
    |||| |||||||||| |||||||||||       ||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  31910554 ggtgtcatttaatttaggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattaaattaaagaggagtatcaattttatcatggtctat 31910653  T
Q  103 ccacactatattttttctctttctctttcaccattttcttcaacctccatcagtgtcctcctctccacttctctaccttttctcataaacccccaacaca 202  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  31910654 c-acactatattttttctctttctctttcaccattttcttcaacctccatcactgttctcctctccacttctctaccttttctcataaacccctaacaca 31910752  T
Q  203 gtcaccactaaa 214  Q
    ||||||||||||    
T  31910753 gtcaccactaaa 31910764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 32449351 - 32449492
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcaccat 136  Q
    ||||||||||||||| | ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32449351 ccaccatggaaaaat-attttttgacaattagattaaagaggaataccaattttatcatggtctatccacactatattttttctctttctctttcaccat 32449449  T
Q  137 tttcttcaacctccatcagtgtcctcctctccacttctctacc 179  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  32449450 tttcttcaacctccatcactgttctcctctccacttctctacc 32449492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 31911482 - 31911369
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcaccat 136  Q
    ||||||||||||| | | ||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||    ||||||||| |||    
T  31911482 ccaccatggaaaagt-attttttgaccatcagattaaggaggagtaccgattttatcatggtctatccacactatattttttc----tctctttcatcat 31911388  T
Q  137 tttcttcaacctccatcag 155  Q
    |||||||||||||||||||    
T  31911387 tttcttcaacctccatcag 31911369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 32450232 - 32450119
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcaccat 136  Q
    ||||||||||||| | | ||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||    ||||||||| |||    
T  32450232 ccaccatggaaaagt-attttttgaccatcagattaaggaggagtaccgattttatcatggtctatccacactatattttttc----tctctttcatcat 32450138  T
Q  137 tttcttcaacctccatcag 155  Q
    |||||||||||||||||||    
T  32450137 tttcttcaacctccatcag 32450119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 17978314 - 17978412
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactata-ttttttctctttctctttcaccattttcttcaacctccat 152  Q
    |||||| ||||||||||||||||| |||  ||||||||||||||||||| | || ||| |||||||||||||||| ||||  | | |||||||||||||    
T  17978314 tttttagccattagattaaagaggtgtattaattttatcatggtctatctatacaatatttttttctctttctctctcacattgtccttcaacctccat 17978412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 37142709 - 37142611
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactata-ttttttctctttctctttcaccattttcttcaacctccat 152  Q
    |||||| ||||||||||||||||| ||   ||||||||||||||||||| | || ||| |||||||||||||||| ||||  | | |||||||||||||    
T  37142709 tttttagccattagattaaagaggtgtgttaattttatcatggtctatctatacaatatttttttctctttctctctcacattgtccttcaacctccat 37142611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 34372269 - 34372212
Alignment:
Q  62 ccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttc 119  Q
    |||||||||||||||||||||  ||||||||||||| || || |||||||||||||||    
T  34372269 ccattagattaaagaggagtattaattttatcatggactgtctacactatattttttc 34372212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 22061381 - 22061457
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactata-ttttttctctttctcttt 130  Q
    |||| |||||||||||||||||||||||  ||||||||||||| || | ||||| ||| ||||||| ||||||||||    
T  22061381 ttttcaaccattagattaaagaggagtatgaattttatcatggactgttcacaccatatttttttccctttctcttt 22061457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 32893662 - 32893719
Alignment:
Q  61 accattagattaaagaggagtaccaattttatcatggtctatccacactatatttttt 118  Q
    ||||||||||||||  |||| ||  ||||||||||||||||||||||||| |||||||    
T  32893662 accattagattaaattggagcactgattttatcatggtctatccacactacatttttt 32893719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 31634102 - 31634218
Alignment:
Q  2 gggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatggtct 100  Q
    ||||||||||||||||| |||||||||        | ||||||| ||| |||||||||||||||| ||||||| ||| | || |||||||||||||||||    
T  31634102 gggtgccatttaatttgcgaaaggcttatttttttctaccatgggaaagttagtttttaaccatttgattaaatagg-gaacacaattttatcatggtct 31634200  T
Q  101 atccacactatatttttt 118  Q
     || ||||  ||||||||    
T  31634201 ttcaacacgctatttttt 31634218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 20351308 - 20351233
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctcttt 130  Q
    |||| ||| |||||||||||||| ||||  ||||||||||||| ||| | |||| |||||||||  ||||||||||    
T  20351308 ttttcaactattagattaaagagaagtattaattttatcatggactacctacaccatatttttttcctttctcttt 20351233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 23424522 - 23424564
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatgg 97  Q
    |||| |||||||||||||||||||||||  |||||||||||||    
T  23424522 ttttcaaccattagattaaagaggagtattaattttatcatgg 23424564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 33409433 - 33409371
Alignment:
Q  56 ttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatatttttt 118  Q
    ||||| ||||||||||||||||| |||   |||||| ||||||||||  ||||||||||||||    
T  33409433 ttttatccattagattaaagaggtgtatagattttaacatggtctatgtacactatatttttt 33409371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 47377646 - 47377533
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctat 102  Q
    |||||||||||||||||||||||   |       ||||||||| ||| ||| |||| | |||||||||| |||||||  |  |||||||| || ||||||    
T  47377646 ggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagtta-ttttcagccattagatttaagaggaacattaattttattatagtctat 47377548  T
Q  103 ccacactatattttt 117  Q
    |||||||||||||||    
T  47377547 ccacactatattttt 47377533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 49346164 - 49346221
Alignment:
Q  61 accattagattaaagaggagtaccaattttatcatggtctatccacactatatttttt 118  Q
    ||||||||||||||  |||| ||  ||||||||||||||||||||||| | |||||||    
T  49346164 accattagattaaattggagcactgattttatcatggtctatccacacaacatttttt 49346221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 39429276 - 39429340
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttc 119  Q
    |||| |||||||||||||| ||||||||  ||||||||||||| ||  | |||| ||||||||||    
T  39429276 ttttcaaccattagattaaggaggagtattaattttatcatggactgcctacaccatattttttc 39429340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 41092172 - 41092287
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatggtcta 101  Q
    |||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||| ||||||| ||| | || |||||||||||||||||     
T  41092172 ggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttagtttttaaccatttgattaaatagg-gaacacaattttatcatggtctt 41092270  T
Q  102 tccacactatatttttt 118  Q
    || ||||  ||||||||    
T  41092271 tcaacacactatttttt 41092287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 5875172 - 5875079
Alignment:
Q  61 accattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcaccattttcttcaacctccatca 154  Q
    ||||||| |||||| |||| |||  ||||||| ||||| | ||||||||  |||||||  ||||||||||||||||||||||||||||||||||    
T  5875172 accattaaattaaaaaggaatacagattttatgatggtatgtccacacttgatttttttactttctctttcaccattttcttcaacctccatca 5875079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 8181522 - 8181442
Alignment:
Q  65 ttagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcaccattttcttcaac 146  Q
    |||||||||||| |||||   ||||||||||||||| | ||||||||||||||| |||||| |||||| |||| ||||||||    
T  8181522 ttagattaaagatgagtatagattttatcatggtcttttcacactatattttttttctttcactttca-cattgtcttcaac 8181442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 35759287 - 35759190
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatggtct 100  Q
    |||||| ||||||| |||||||||| |       ||||||||| ||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  35759287 ggtgccgtttaattagggaaaggctggtttttccccaccatgggaaagttagtttttaaccattagattaaatagg-gtacacaattttatcatggtct 35759190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 41348178 - 41348241
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatggtct 100  Q
    ||||||||| ||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  41348178 ccaccatgggaaagttagtttttaaccattagattaaatagg-gtacacaattttatcatggtct 41348241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 788435 - 788374
Alignment:
Q  89 ttatcatggtctatccacactatattttttctctttctctttcaccattttcttcaacctcca 151  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||   |||||||||||||||    
T  788435 ttatcatggtccatccacattatatttttt-tctttctctttcactgctttcttcaacctcca 788374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 42346102 - 42346060
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatgg 97  Q
    |||| |||||||||||||||||||||||  |||||||||||||    
T  42346102 ttttcaaccattagattaaagaggagtattaattttatcatgg 42346060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 5873222 - 5873279
Alignment:
Q  61 accattagattaaagaggagtaccaattttatcatggtctatccacactatatttttt 118  Q
    |||||||||||||| ||||  ||  ||||||| ||||||| |||||||||||||||||    
T  5873222 accattagattaaaaaggaacacatattttatgatggtctgtccacactatatttttt 5873279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 30846511 - 30846478
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagat 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  30846511 ccaccatgggaaaattagtttttaaccattagat 30846478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 7054124 - 7054183
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatgg 97  Q
    ||||||||||||| ||  |||| |||||||||||||| ||||||||  |||||||||||||    
T  7054124 ccaccatggaaaagttt-ttttcaaccattagattaaggaggagtattaattttatcatgg 7054183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 7054814 - 7054774
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcat 95  Q
    |||| |||||||||||||||||||||||  |||||||||||    
T  7054814 ttttcaaccattagattaaagaggagtattaattttatcat 7054774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 42345445 - 42345509
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttc 119  Q
    |||| |||||||||||||| ||||||||  ||||||||||||| ||  | |||| ||||||||||    
T  42345445 ttttcaaccattagattaaggaggagtattaattttatcatggactgcctacaccatattttttc 42345509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 32321425 - 32321331
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcac 133  Q
    ||||||||||  ||||| |||||| |||||||||||||||||||||  |||||||||||| ||| ||||||||||||| ||| |||||| |||||||    
T  32321425 ccaccatggatcaattaattttta-ccattagattaaagaggagtataaattttatcatgatctttccacactatattattt-tctttcactttcac 32321331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 20313441 - 20313348
Alignment:
Q  41 catggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcacc 134  Q
    ||||| |||||| | |||| |||||||||||||||||| |||   || |||| |||||||| | ||||| |||||||| |||||||||||||||    
T  20313441 catgggaaaattggatttttaccattagattaaagaggtgtattgatcttataatggtctacctacactttattttttttctttctctttcacc 20313348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 44406255 - 44406323
Alignment:
Q  62 ccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctcttt 130  Q
    ||||||||||||||| |||||  ||||||||||||| ||| | |||| |||||||||  ||||||||||    
T  44406255 ccattagattaaagaagagtattaattttatcatggactacctacaccatatttttttcctttctcttt 44406323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 47480566 - 47480633
Alignment:
Q  63 cattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctcttt 130  Q
    ||||| ||||||||||||||  ||||||||||||| ||| | |||| |||||||||  ||||||||||    
T  47480566 cattaaattaaagaggagtattaattttatcatggactacctacaccatatttttttcctttctcttt 47480633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 43768756 - 43768714
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatgg 97  Q
    |||| |||||||||||||||||||||||  |||||||||||||    
T  43768756 ttttcaaccattagattaaagaggagtattaattttatcatgg 43768714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 45298372 - 45298314
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatgg 97  Q
    ||||||||||||| ||  |||| |||||| |||||||||||| ||| ||||||||||||||    
T  45298372 ccaccatggaaaactt--ttttcaaccatcagattaaagaggtgtatcaattttatcatgg 45298314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 2992053 - 2992151
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactata-ttttttctctttctctttcaccattttcttcaacctccat 152  Q
    |||||| ||||||||||||||||| |||  ||||||||||||||||||| | || ||| |||||||||||||||| ||||  | | |||||||||||||    
T  2992053 tttttagccattagattaaagaggtgtattaattttatcatggtctatctatacaatatttttttctctttctctctcacattgtccttcaacctccat 2992151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 16426553 - 16426668
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaaga-ggagtaccaattttatcatggtcta 101  Q
    |||||||||||||||||||||||||||       ||||||||||||| ||| |||||||||||| ||||||  | ||| || |||||||||||||||||     
T  16426553 ggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttaatttttaaccatttgattaagtagggaata-caattttatcatggtctt 16426651  T
Q  102 tccacactatatttttt 118  Q
    || ||||  ||||||||    
T  16426652 tcaacacactatttttt 16426668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 17946899 - 17946956
Alignment:
Q  61 accattagattaaagaggagtaccaattttatcatggtctatccacactatatttttt 118  Q
    ||||||||||||||  |||| ||  ||||||||||||||||||||||||| |||||||    
T  17946899 accattagattaaattggagcactgattttatcatggtctatccacactacatttttt 17946956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 20992016 - 20991974
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatgg 97  Q
    |||| |||||||||||||||||||||||  |||||||||||||    
T  20992016 ttttcaaccattagattaaagaggagtattaattttatcatgg 20991974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 6609584 - 6609617
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagat 70  Q
    ||||||||||||| ||||||||||||||||||||    
T  6609584 ccaccatggaaaagttagtttttaaccattagat 6609617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 6610058 - 6610021
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaa 74  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  6610058 ccaccatgggaaagttagtttttaaccattagattaaa 6610021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 15562055 - 15562018
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaa 74  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  15562055 ccaccatgggaaagttagtttttaaccattagattaaa 15562018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 16903431 - 16903464
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagat 70  Q
    ||||||||||||| ||||||||||||||||||||    
T  16903431 ccaccatggaaaagttagtttttaaccattagat 16903464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 16930003 - 16930039
Alignment:
Q  111 tattttttct-ctttctctttcaccattttcttcaac 146  Q
    |||||||||| ||||||||||||||||||||||||||    
T  16930003 tattttttcttctttctctttcaccattttcttcaac 16930039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 16987491 - 16987527
Alignment:
Q  111 tattttttct-ctttctctttcaccattttcttcaac 146  Q
    |||||||||| ||||||||||||||||||||||||||    
T  16987491 tattttttcttctttctctttcaccattttcttcaac 16987527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 51609432 - 51609530
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactata-ttttttctctttctctttcaccattttcttcaacctccat 152  Q
    |||||| |||||||||| |||||| |||  ||||||||||||||||||| |||| ||| |||||||||||||||| ||||  | | |||||||||||||    
T  51609432 tttttatccattagattgaagaggtgtattaattttatcatggtctatctacacaatatttttttctctttctctctcacattgtccttcaacctccat 51609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 29334937 - 29334869
Alignment:
Q  62 ccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctcttt 130  Q
    |||||| ||||||||||||||  ||||||||||||| ||||| ||||||||||||||  ||||||||||    
T  29334937 ccattaaattaaagaggagtattaattttatcatggactatctacactatatttttttcctttctcttt 29334869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 36385723 - 36385798
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctcttt 130  Q
    ||||| ||||||||||||||||||||||  ||||||||||| | ||  | |||| ||||||||| |||||||||||    
T  36385723 ttttttaccattagattaaagaggagtattaattttatcataggctgcctacaccatattttttttctttctcttt 36385798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 42383770 - 42383810
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcat 95  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  42383770 ttttttaccattagattaaagaggagtactaattttatcat 42383810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 17151894 - 17151853
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagagg 78  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||    
T  17151894 ccaccatgggaaagttagtttttgaccattagattaaagagg 17151853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 41134623 - 41134558
Alignment:
Q  61 accattagattaaagaggagtaccaattttatcatggtctatccacactatatt-ttttctctttc 125  Q
    ||||||||||||||||||||||  ||||||| |||||||| ||  || |||||| |||||||||||    
T  41134623 accattagattaaagaggagtattaattttaccatggtctgtctgcattatattattttctctttc 41134558  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 50427474 - 50427538
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttc 119  Q
    |||| ||||||||||||||| |||||||  ||||||||||||  || || |||| ||||||||||    
T  50427474 ttttcaaccattagattaaaaaggagtattaattttatcatgaactgtctacaccatattttttc 50427538  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 50428143 - 50428079
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttc 119  Q
    |||| |||||||| ||||||||||||||  |||||||||||||  | || |||| ||||||||||    
T  50428143 ttttcaaccattaaattaaagaggagtattaattttatcatggattgtctacaccatattttttc 50428079  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 39950330 - 39950232
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactata-ttttttctctttctctttcaccattttcttcaacctccat 152  Q
    |||||| ||||||||||||||||| ||   ||||||||||||||||||| | || ||| |||||||||||||||| ||||  | | |||||||||||||    
T  39950330 tttttagccattagattaaagaggtgtgttaattttatcatggtctatctatacaatatttttttctctttctctctcacattgtccttcaacctccat 39950232  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 43588326 - 43588440
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttcaccat 136  Q
    ||||||| | ||| |||| |||| ||||||||||||||||||  ||   || |||||||||||| |||| | |||||||||  ||||||||||| ||||     
T  43588326 ccaccatagtaaagttagatttttaccattagattaaagaggtctattgatcttatcatggtctgtccatattatattttt--tctttctcttt-accag 43588422  T
Q  137 tttcttcaacctccatca 154  Q
    | ||||||||||||||||    
T  43588423 tgtcttcaacctccatca 43588440  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 18153424 - 18153356
Alignment:
Q  62 ccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctcttt 130  Q
    ||||||||||||| |||||||  ||||||||||||| ||| | |||  ||||||||| |||||||||||    
T  18153424 ccattagattaaaaaggagtattaattttatcatggactacctacaacatattttttttctttctcttt 18153356  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 1969830 - 1969872
Alignment:
Q  55 tttttaaccattagattaaagaggagtaccaattttatcatgg 97  Q
    |||| |||||||||||||||||||||||  |||||||||||||    
T  1969830 ttttcaaccattagattaaagaggagtattaattttatcatgg 1969872  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 9923422 - 9923479
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcat 95  Q
    ||||||||||||| ||  |||| |||||||||||||||||||||||  |||||||||||    
T  9923422 ccaccatggaaaagttt-ttttcaaccattagattaaagaggagtattaattttatcat 9923479  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 3596308 - 3596275
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagat 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  3596308 ccaccatgggaaaattagtttttaaccattagat 3596275  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 8320908 - 8320945
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaa 74  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  8320908 ccaccatgggaaagttagtttttaaccattagattaaa 8320945  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 42655755 - 42655722
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagat 70  Q
    ||||||||||||||||||||||| ||||||||||    
T  42655755 ccaccatggaaaaattagtttttgaccattagat 42655722  T

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Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 17339 - 17454
Alignment:
Q  3 ggtgccatttaatttgggaaaggcttgnnnnnnnccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatggtcta 101  Q
    ||||||||||||||||| |||||||||       ||||||||| ||| |||||||||||||||| ||| ||| ||| | || |||||||||||||||||     
T  17339 ggtgccatttaatttggaaaaggcttgttttttcccaccatgggaaagttagtttttaaccatttgatcaaatagg-gaacacaattttatcatggtctt 17437  T
Q  102 tccacactatatttttt 118  Q
    || ||||  ||||||||    
T  17438 tcaacacactatttttt 17454  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 3802145 - 3802201
Alignment:
Q  85 aattttatcatggtctatccacactatattttttctctttctctttcaccattttctt 142  Q
    |||||||||||||||| || ||||||||||||||  |||||||||||| |||||||||    
T  3802145 aattttatcatggtctttctacactatatttttttcctttctctttca-cattttctt 3802201  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 3802776 - 3802729
Alignment:
Q  86 attttatcatggtctatccacactatattttttctctttctctttcac 133  Q
    ||||||||||||||| ||||||||||||||| |  |||||||||||||    
T  3802776 attttatcatggtctttccacactatattttcttcctttctctttcac 3802729  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 1034755 - 1034814
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtac-caattttatcatg 96  Q
    ||||||| | ||| |||||||||||||||||||||||| ||| |||| |||||||||||||    
T  1034755 ccaccataggaaagttagtttttaaccattagattaaatagg-gtacacaattttatcatg 1034814  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 24126006 - 24126085
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttt 117  Q
    ||||||||| ||| ||| |||| | |||||||||| |||||||  |  |||||||| || |||||||||||||||||||||    
T  24126006 ccaccatgggaaagtta-ttttcagccattagatttaagaggaacattaattttattatagtctatccacactatattttt 24126085  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 42520 - 42601
Alignment:
Q  37 ccaccatggaaaaattagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatatttttt 118  Q
    ||||||||| ||| || | ||| ||||||||||||||| ||||  |||||||||||||| ||||  |  |||||||||||||    
T  42520 ccaccatgggaaagttgggtttaaaccattagattaaataggaacaccaattttatcatagtctgactccactatatttttt 42601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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