View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_6 (Length: 457)
Name: NF15715_low_6
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 21323585 - 21323151
Alignment:
| Q |
14 |
aatagaaacgacctccattctgttaaactacagatcccaagttgattagaatgaacaaaagatacatggcattgatatgagtagtgcaaaccagagaatt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21323585 |
aatagaaacgacctccattctgttaaactacagatcccaagttgattagaatgaacaaaagatacatggcattgatatgagtagtacaaaccagagaatt |
21323486 |
T |
|
| Q |
114 |
ttattcactttannnnnnn-cttatcttatttactactattataattttatacgatatgggtagcgtacttcttcattacagcttgatgtataattagca |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
21323485 |
ttattcactttattttttttcttatcttatttactactattataattttatacgatatgggtagcgtacttcttcattacagcttgttgtataactagca |
21323386 |
T |
|
| Q |
213 |
caatctttgtagttatcgcttttatcgtaacaaattcttatttcaagcaaatattcttttgtagggtcacaaacaatttgtggctcttttttgttgatat |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
21323385 |
caatctttgtagttatcgcttttatcgtagcaaattcttatttcaagcaaatattcttttgtagggtcacaaacaatttgtggctctttt---tttatat |
21323289 |
T |
|
| Q |
313 |
gattctttatagcagcctcaatgtcagttttcttaacgagttcttctcctgcatttatttttgccttggcaagaatatctttgatattcttcccaggttt |
412 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21323288 |
gattctttatagcagcctcaatgtcagttctcttaacgagttcttctcccgcttttatttttgccttggcaagaatatctttgatattctttccaggttt |
21323189 |
T |
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| Q |
413 |
tccataaagaactaatgagtgcttaaaatactcctttg |
450 |
Q |
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|||||||||| |||||||||||||||||||||| |||| |
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| T |
21323188 |
tccataaagagctaatgagtgcttaaaatactcatttg |
21323151 |
T |
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