View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15715_low_9 (Length: 442)
Name: NF15715_low_9
Description: NF15715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15715_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 2479963 - 2480391
Alignment:
| Q |
1 |
ataagattagtgcgtagttagggatatggtccacaaaagtgtttcatactgtaagtgaaaaggagttctttgaagacaaattgatttgagagtaacctaa |
100 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2479963 |
ataagattagagcttagttagggatatggtccacaaaagtgtttcatactgtaagtgaaaaggagttctttgaagacaaattgatttcagagtaacctaa |
2480062 |
T |
|
| Q |
101 |
aaaggagttcttttatacagtacaatagtatgttattaatattatatattatagaagtaacatcagactcctgaaggttacttgaagtttcaattaagta |
200 |
Q |
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| T |
2480063 |
aaaggagttctttaatacagtacaatagtatgttattaatattatatattatagaagtaacatcagactcctgaaggttacttgaagtttcaattaagta |
2480162 |
T |
|
| Q |
201 |
gctcttcaatcatctgcatggtaacaatatcctcttcatgttctatcccatttttctcagcacaatcaccaacaattgtactattattaggtgctgattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2480163 |
gctcttcaatcatctgcatggtaacaatatcctcttcatgttctatcccatttttctcagcacaatcaccaacaattgtactattattaggtgctgattt |
2480262 |
T |
|
| Q |
301 |
ttctgatgatgacacataatttgattcatgactatcttcatgnnnnnnnccaagctccacccttaagatccaattagagtcagaatgtgatcctgctcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2480263 |
ttctgatgatgacacataatttgattcatgactatcttcatgtttctttccaagctccacccttaagatccaattagagtcagaatgtgatcctgctcct |
2480362 |
T |
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| Q |
401 |
ttttgccagactcctatgtgagaattatc |
429 |
Q |
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| T |
2480363 |
ttttgccagactcctatgtgagaattatc |
2480391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 429
Target Start/End: Complemental strand, 49532904 - 49532845
Alignment:
| Q |
370 |
ccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaattatc |
429 |
Q |
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||||||||| |||||||||| ||| |||| ||||||||| ||||| |||||||||||||| |
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| T |
49532904 |
ccaattagaatcagaatgtggtccagctcttttttgccacactccaatgtgagaattatc |
49532845 |
T |
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