View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15716_low_2 (Length: 736)
Name: NF15716_low_2
Description: NF15716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15716_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 275 - 724
Target Start/End: Original strand, 47101826 - 47102275
Alignment:
| Q |
275 |
tgatgtgactaatgaaaaatatatgtaactagattagattggaatggaaagaaaagaaacttacaaaagtgggtgacgaatctctgaaacccaagaaccc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47101826 |
tgatgtgactaatgaaaaatatatgtaactagattagattggaatggaaagaaaagaaacttacaaaagtgggtgacgaatctctgaaacccaagaaccc |
47101925 |
T |
|
| Q |
375 |
caatgtcgttgcctgacacctctgaacttctttgattgaaccatgattgcaaagtgggttgttgtgcactgcaaagagatatggaaggacaaagttcaga |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47101926 |
caatgtcgttgcctgacacctctgaacttctttgattgaaccatgattgcaaagtgggttgttgtgcactgcaaagagatatggaaggacaaagttcaga |
47102025 |
T |
|
| Q |
475 |
gggaacagaatagttagatataaagggacggaggcaagtgactgattaagtgtacgtacactgtcggcgatcgaactaaaagattaactcaaagtttagc |
574 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47102026 |
gggaacagaatagttagatataaagggatggaggcaagtgactgattaagtgtacgtacactgtcggcgatcgaactaaaagattaactcaaagtttagc |
47102125 |
T |
|
| Q |
575 |
cagtacaacaaactattaaacgttttcacctaaacaagtaccctatcaaataaatgttgtgcttaactttgttgcgcagtcgttggaactagctagtttt |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47102126 |
cagtacaacaaactattaaacgttttcacctaaacaagtaccctatcaaataaatgttgtgcttaactttgttgcgcagtcgttggaactagctagtttt |
47102225 |
T |
|
| Q |
675 |
tcttccttttatgatataactgtttgtatttttactttcttatatatatt |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47102226 |
tcttccttttatgatataactgtttgtatttttactttcttatatatatt |
47102275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 47101504 - 47101779
Alignment:
| Q |
1 |
agaaaaactatatatttgtctataattctatccctaagtgctagggatcaatttccattcttttctcacttggatcctctagggttaggttttaccttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47101504 |
agaaaaactatatatttgtctataattctatccctaagtgctagggatcaatttccattcttttc--acttggatcctctagggttaggttttaccttgc |
47101601 |
T |
|
| Q |
101 |
aacaagccgttcgattaatggatctctcttattataatgacatatacaaatagctatcatgccgccacaccatgaaagcacaccgtagagggtccattga |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47101602 |
aacaagccgttagattaatggatctctcttaatataatgacatatacaaatagctatcatgccgccacaccatgaaagcacaccatagagggtccattga |
47101701 |
T |
|
| Q |
201 |
aggactatattatatatgtgcacatcattttgaatttgacaaaattaaccataattttcttgatttggacaaactgat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47101702 |
aggactatattatatatgtgcacatcattttgaatttgacaaaattaaccataattttcttgatttggacaaactgat |
47101779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 348 - 411
Target Start/End: Original strand, 2429372 - 2429435
Alignment:
| Q |
348 |
tgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgatt |
411 |
Q |
| |
|
||||||||||| || |||||||| |||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
2429372 |
tgacgaatctccgagacccaagagccccaatggcgttgcctaacacctctgaatttctttgatt |
2429435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 44649210 - 44649281
Alignment:
| Q |
348 |
tgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgattgaaccatg |
419 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
44649210 |
tgacgaatctcagagacccaagagccccaatggcgttgcctgacacctctgaacttctttgaatgtaccatg |
44649281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 49532400 - 49532337
Alignment:
| Q |
345 |
gggtgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttg |
408 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| || || |||||||| |||||||||||||||| |
|
|
| T |
49532400 |
gggtggcgaatttctgacacccaagagccccactggcgctgcctgactcctctgaacttctttg |
49532337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University