View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15716_low_3 (Length: 718)

Name: NF15716_low_3
Description: NF15716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15716_low_3
NF15716_low_3
[»] chr4 (10 HSPs)
chr4 (136-709)||(566225-566798)
chr4 (1-59)||(566875-566933)
chr4 (576-671)||(553553-553648)
chr4 (559-619)||(1533903-1533963)
chr4 (253-305)||(5035628-5035680)
chr4 (584-664)||(53761710-53761790)
chr4 (254-369)||(12124766-12124881)
chr4 (139-180)||(1523994-1524035)
chr4 (559-620)||(3438479-3438540)
chr4 (254-299)||(12126892-12126937)
[»] chr6 (19 HSPs)
chr6 (227-368)||(12097351-12097495)
chr6 (584-642)||(12097121-12097179)
chr6 (487-541)||(12097187-12097241)
chr6 (584-664)||(6432242-6432322)
chr6 (584-658)||(7119244-7119318)
chr6 (584-658)||(7131722-7131796)
chr6 (591-664)||(6589268-6589341)
chr6 (559-664)||(11936188-11936293)
chr6 (559-664)||(11948168-11948273)
chr6 (584-664)||(6426592-6426672)
chr6 (259-299)||(6437161-6437201)
chr6 (247-311)||(7132543-7132607)
chr6 (247-311)||(7135466-7135530)
chr6 (253-311)||(6395775-6395833)
chr6 (591-664)||(6394945-6395018)
chr6 (601-638)||(6603157-6603194)
chr6 (139-180)||(9412454-9412495)
chr6 (142-183)||(14810041-14810082)
chr6 (255-312)||(14821621-14821678)
[»] chr5 (6 HSPs)
chr5 (565-664)||(41889473-41889572)
chr5 (256-305)||(32268776-32268825)
chr5 (250-369)||(17205898-17206017)
chr5 (584-618)||(32267599-32267633)
chr5 (142-180)||(41886296-41886334)
chr5 (247-305)||(41900251-41900309)
[»] chr3 (3 HSPs)
chr3 (584-658)||(13470670-13470744)
chr3 (142-180)||(51120330-51120368)
chr3 (247-311)||(51763147-51763211)
[»] chr7 (6 HSPs)
chr7 (247-308)||(15091350-15091411)
chr7 (584-654)||(10614684-10614754)
chr7 (552-653)||(7977670-7977771)
chr7 (247-311)||(10168807-10168871)
chr7 (247-311)||(10176332-10176396)
chr7 (253-311)||(7978108-7978165)
[»] chr1 (3 HSPs)
chr1 (265-305)||(15837976-15838016)
chr1 (247-311)||(33161433-33161497)
chr1 (139-176)||(7561347-7561384)
[»] chr8 (1 HSPs)
chr8 (247-305)||(32152212-32152270)


Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 136 - 709
Target Start/End: Complemental strand, 566798 - 566225
Alignment:
Q  136 gacttttatttacctgatgactgttgggaacgtgtcttcaaattcatcgtcaccaacaaattcatcatcagcaacgaatacagaaacaagaatcgtgata 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566798 gacttttatttacctgatgactgttgggaacgtgtcttcaaattcatcgtcaccaacaaattcatcatcagcaacgaatacagaaacaagaatcgtgata 566699  T
Q  236 attacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtactccaacaatccc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  566698 attacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgattttcacttgctatctgtactccaacagtccc 566599  T
Q  336 tttccttgatcagctcttcaaaagattcaccaacnnnnnnnnnnnnnnnnnnnngagctactactataaactcgatgtacttttctctcaaattgcttgt 435  Q
    ||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||    
T  566598 tttccttgatcagctcttcaaaagattcaccaacctctcctctctctatctctcgagctactactataaactcgatgtacttttctctcaaattgcttgt 566499  T
Q  436 ttccaattgaacatcacgtcgatcattcttcgccacaaacctatcaatccagcaaatgtgttcctcattgctaattgttttcccaatttgcaacagctta 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566498 ttccaattgaacatcacgtcgatcattcttcgccacaaacctatcaatccagcaaatgtgttcctcattgctaattgttttcccaatttgcaacagctta 566399  T
Q  536 atttgactggttgttctggcatgtctgacgaagggattactcatgttctaaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgt 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  566398 atttgactggttgttctggcatgtctgacgaagggattactcatgttttaaggatatgttgtaacattacacatttgaacttaagcagctgtagaaatgt 566299  T
Q  636 gaagctacgtggaatgaactttgaagttctaaaacttgaaacgttggatttatcatgttcaagcgttgatgatg 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566298 gaagctacgtggaatgaactttgaagttctaaaacttgaaacgttggatttatcatgttcaagcgttgatgatg 566225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 566933 - 566875
Alignment:
Q  1 ctaatatcatttgcagttgtcctgaatatgaaaaagaagaagagaagtaaagagtttat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566933 ctaatatcatttgcagttgtcctgaatatgaaaaagaagaagagaagtaaagagtttat 566875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 576 - 671
Target Start/End: Complemental strand, 553648 - 553553
Alignment:
Q  576 tcatgttctaaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttgaagttctaaaact 671  Q
    ||||||| |||||| |||||||||||||| ||||||||||||| || ||||| |||  |||||| |||||  | |||||||| ||||||| |||||    
T  553648 tcatgttttaaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaact 553553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 619
Target Start/End: Original strand, 1533903 - 1533963
Alignment:
Q  559 tctgacgaagggattactcatgttctaaggatatgttgtaacattacacatttgaacttag 619  Q
    ||||| ||||| |||| ||||||| |||||| ||||||||| || ||||||||||||||||    
T  1533903 tctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaacttag 1533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||| ||||| || || ||||||||||||||||||||| |||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 664
Target Start/End: Original strand, 53761710 - 53761790
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttgaagttc 664  Q
    |||||| ||||||||||||||  |||||||||||||||   ||| |||  |||||||||  |||||||||||||| |||||    
T  53761710 taaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttc 53761790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 369
Target Start/End: Complemental strand, 12124881 - 12124766
Alignment:
Q  254 ctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtactccaacaatccctttccttgatcagctctt 353  Q
    |||||||| | ||||||||||| ||||||||||||||| ||||||| | ||||||  | || |||| |  |  |||||||||||||||||| |  |||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaatccctttccttgaccgcctctt 12124782  T
Q  354 caaaagattcaccaac 369  Q
    | |||| ||| |||||    
T  12124781 ccaaaggttccccaac 12124766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 1523994 - 1524035
Alignment:
Q  139 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 180  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  1523994 ttttacttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 620
Target Start/End: Original strand, 3438479 - 3438540
Alignment:
Q  559 tctgacgaagggattactcatgttctaaggatatgttgtaacattacacatttgaacttagc 620  Q
    |||||||||||  ||| ||| ||| |||||| ||||||||| |||| |||||||||||||||    
T  3438479 tctgacgaaggtgttattcaagttttaaggagatgttgtaagattagacatttgaacttagc 3438540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  254 ctctctccttagtctccaaacagtttctctccatcaccgaccgtct 299  Q
    |||||||| | ||||||||||| ||||||||||||||| |||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 227 - 368
Target Start/End: Complemental strand, 12097495 - 12097351
Alignment:
Q  227 atcgtgataattacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtactcc 326  Q
    ||||||||  ||||||||  |||||||||||||| |||||||||||||| ||||||| |||||  ||||||||||||||||||||| |||||||||||||    
T  12097495 atcgtgatcgttacttgactttgaattctctctctttagtctccaaacaatttctcttcatcagagaccgtcttcgattttcacttactatctgtactcc 12097396  T
Q  327 aacaatccctttccttg---atcagctcttcaaaagattcaccaa 368  Q
    |||| ||||||||||||   |||| ||||||||||| ||||||||    
T  12097395 aacagtccctttccttgatcatcacctcttcaaaaggttcaccaa 12097351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 584 - 642
Target Start/End: Complemental strand, 12097179 - 12097121
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagcta 642  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||    
T  12097179 taaggatatgttgtaacattacacatttgaacttaaccgcctgtaaaaatgtgaagcta 12097121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 487 - 541
Target Start/End: Complemental strand, 12097241 - 12097187
Alignment:
Q  487 gcaaatgtgttcctcattgctaattgttttcccaatttgcaacagcttaatttga 541  Q
    |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  12097241 gcaaatctgttcctcattgctaattgtttccccaatttgcaacaacttaatttga 12097187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 584 - 664
Target Start/End: Complemental strand, 6432322 - 6432242
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttgaagttc 664  Q
    |||||| |||||||||  ||| ||||||||||||||||   |||| ||| |||||||||| ||||||||||||||||||||    
T  6432322 taaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttc 6432242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 658
Target Start/End: Complemental strand, 7119318 - 7119244
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttg 658  Q
    |||||| ||||| ||| |||| ||||||||||||||||  |||| |||  |||||||||| ||||||||||||||    
T  7119318 taaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttg 7119244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 658
Target Start/End: Complemental strand, 7131796 - 7131722
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttg 658  Q
    |||||| ||||| ||| |||| ||||||||||||||||  |||| |||  |||||||||| ||||||||||||||    
T  7131796 taaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttg 7131722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 664
Target Start/End: Original strand, 6589268 - 6589341
Alignment:
Q  591 atgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttgaagttc 664  Q
    ||||||||| ||||  |||||||||||||||  |||||  || |||||||||| |||||||||||||| |||||    
T  6589268 atgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttc 6589341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 664
Target Start/End: Original strand, 11936188 - 11936293
Alignment:
Q  559 tctgacgaagggattactcatgttctaaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttg 658  Q
    ||||| ||||| |||  ||||||| ||| ||||||||||||||||| ||||||||| ||| |  ||||| |||   |||||||||||  | |||||||||    
T  11936188 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttg 11936287  T
Q  659 aagttc 664  Q
    ||||||    
T  11936288 aagttc 11936293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 664
Target Start/End: Original strand, 11948168 - 11948273
Alignment:
Q  559 tctgacgaagggattactcatgttctaaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttg 658  Q
    ||||| ||||| |||  ||||||| ||| ||||||||||||||||| ||||||||| ||| |  ||||| |||   |||||||||||  | |||||||||    
T  11948168 tctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttg 11948267  T
Q  659 aagttc 664  Q
    ||||||    
T  11948268 aagttc 11948273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 664
Target Start/End: Complemental strand, 6426672 - 6426592
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttgaagttc 664  Q
    |||||| |||||||||  ||| |||||||||||||||   |||| |||| ||||| |||| |||||||||||||| |||||    
T  6426672 taaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttc 6426592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 6437201 - 6437161
Alignment:
Q  259 tccttagtctccaaacagtttctctccatcaccgaccgtct 299  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  6437201 tccttagtctccaaacagttcctctccatcaccaaccgtct 6437161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 7132607 - 7132543
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| || || ||||||||| |||| |||||||||| |||||||| |||||| |||||    
T  7132607 ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcact 7132543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 7135530 - 7135466
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| || || ||||||||| |||| |||||||||| |||||||| |||||| |||||    
T  7135530 ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcact 7135466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 6395833 - 6395775
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||| | |||||||| ||||| |||||||||||| | | |||||||||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgattttcact 6395775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 664
Target Start/End: Complemental strand, 6395018 - 6394945
Alignment:
Q  591 atgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttgaagttc 664  Q
    |||||||||  ||| |||||||||||||||   |||| |||| ||||| |||| |||||||||||||| |||||    
T  6395018 atgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttc 6394945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 638
Target Start/End: Original strand, 6603157 - 6603194
Alignment:
Q  601 attacacatttgaacttagccagctgtacaaatgtgaa 638  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  6603157 attacacatttgaacttagccagttgtacagatgtgaa 6603194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 9412495 - 9412454
Alignment:
Q  139 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 180  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  9412495 ttttatttacctgatgaatgttgggaaagtatcttcaaattc 9412454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 14810082 - 14810041
Alignment:
Q  142 tatttacctgatgactgttgggaacgtgtcttcaaattcatc 183  Q
    |||||||||||||| ||||||||||||||||| | |||||||    
T  14810082 tatttacctgatgagtgttgggaacgtgtctttagattcatc 14810041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 14821678 - 14821621
Alignment:
Q  255 tctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcactt 312  Q
    ||||||| | |||||||| ||||| ||||| |||||| | ||||||||||||||||||    
T  14821678 tctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgattttcactt 14821621  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 565 - 664
Target Start/End: Original strand, 41889473 - 41889572
Alignment:
Q  565 gaagggattactcatgttctaaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttgaagttc 664  Q
    ||||| |||||||| ||| ||||||||||||||||||||| | ||||||||||| || | ||| |||  |||||||||| || |||||||||| ||||||    
T  41889473 gaaggtattactcaagttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttc 41889572  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 32268825 - 32268776
Alignment:
Q  256 ctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    |||||| | |||||||||||||| |||||||||||| |||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 32268776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 369
Target Start/End: Complemental strand, 17206017 - 17205898
Alignment:
Q  250 aattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtactccaacaatccctttccttgatcagc 349  Q
    |||||||| ||| | |||||||||||||| ||||| ||||||||| || | ||||| |||||  || ||| |  || ||||  ||||||| ||| ||| |    
T  17206017 aattctctatccctcgtctccaaacagttactctctatcaccgacagtttccgattctcactcactgtctatgatcaaacacaccctttctttggtcacc 17205918  T
Q  350 tcttcaaaagattcaccaac 369  Q
    |||||||||| |||||||||    
T  17205917 tcttcaaaaggttcaccaac 17205898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 618
Target Start/End: Complemental strand, 32267633 - 32267599
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaactta 618  Q
    ||||||||||||||||||||| |||||||||||||    
T  32267633 taaggatatgttgtaacattagacatttgaactta 32267599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 41886296 - 41886334
Alignment:
Q  142 tatttacctgatgactgttgggaacgtgtcttcaaattc 180  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattc 41886334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 41900251 - 41900309
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||| ||||||||  | ||||||||||||||||||||||||||| ||  |||||||||    
T  41900251 ttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgatt 41900309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 658
Target Start/End: Original strand, 13470670 - 13470744
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaactttg 658  Q
    |||||||||||||||| ||||  |||||||||||||||   |||| ||| |||||||||| ||||||||||||||    
T  13470670 taaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttg 13470744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 51120330 - 51120368
Alignment:
Q  142 tatttacctgatgactgttgggaacgtgtcttcaaattc 180  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  51120330 tatttacctgatgactgttgggaatgtgtcttcaaattc 51120368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 51763147 - 51763211
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||||||| | || ||||||||||| |||||||||||| ||||| | ||||| |||||    
T  51763147 ttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgtttccgattctcact 51763211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 15091350 - 15091411
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttc 308  Q
    ||||||||||||||| | |||||||||||||| |||||||||||| || |||||| ||||||    
T  15091350 ttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttc 15091411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 654
Target Start/End: Complemental strand, 10614754 - 10614684
Alignment:
Q  584 taaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatgaac 654  Q
    |||||||||||||||| ||||  |||||||||||||||   |||| ||| |||||||||| ||||||||||    
T  10614754 taaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaac 10614684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 653
Target Start/End: Complemental strand, 7977771 - 7977670
Alignment:
Q  552 tggcatgtctgacgaagggattactcatgttctaaggatatgttgtaacattacacatttgaacttagccagctgtacaaatgtgaagctacgtggaatg 651  Q
    |||||| ||||| ||||| |||  ||| ||| |||||| |||||||||||||| |||||| ||| ||||| | ||| |||  ||||| ||||||||||||    
T  7977771 tggcatttctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgaatctacgtggaatg 7977672  T
Q  652 aa 653  Q
    ||    
T  7977671 aa 7977670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 10168807 - 10168871
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||| ||  ||||||||| |||||    
T  10168807 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcact 10168871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 10176332 - 10176396
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||| ||  ||||||||| |||||    
T  10176332 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcact 10176396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 7978165 - 7978108
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| ||||| |  |||||||||||||||||| |||||||| ||||||||||    
T  7978165 tctctctccttcgtctc-atgcagtttctctccatcaccaaccgtcttagattttcact 7978108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 15837976 - 15838016
Alignment:
Q  265 gtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 33161497 - 33161433
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| ||| | ||||||||||||||||||||||||||  |  |||||||||| |||||    
T  33161497 ttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcact 33161433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 7561384 - 7561347
Alignment:
Q  139 ttttatttacctgatgactgttgggaacgtgtcttcaa 176  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  7561384 ttttatttacctgatgactgttggaaacatgtcttcaa 7561347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 32152270 - 32152212
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    |||||||| |||||| | |||||||||||||| |||||||||||| || |||| |||||    
T  32152270 ttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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