View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15716_low_4 (Length: 568)
Name: NF15716_low_4
Description: NF15716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15716_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 170 - 551
Target Start/End: Complemental strand, 31761187 - 31760802
Alignment:
| Q |
170 |
tagtatatataagattaacaactaacaaattttgctt----caattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagatt |
265 |
Q |
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|||||||||||| || ||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761187 |
tagtatatataaccctagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagatt |
31761088 |
T |
|
| Q |
266 |
caagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaacct |
365 |
Q |
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| T |
31761087 |
caagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaacct |
31760988 |
T |
|
| Q |
366 |
taaggacttggttgttctatctggtggacacacaattggattttccaaatgcactaactttagggacaggatctacaatgacaccaacatagacaccaat |
465 |
Q |
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| T |
31760987 |
taaagacttagttgttctatctggtggccacacaattggattttccaaatgcactaactttagagacaggatcttcaatgacaccaacatagacaccaat |
31760888 |
T |
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| Q |
466 |
tttgctgccaatttgcaaaagacatgccctcgtattggcggcaacgataatttagcaccatttgattctacacctaacaaagttga |
551 |
Q |
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| T |
31760887 |
tttgctgccaatttgcaaaagacatgccctaaaatcggcggcgacgataatttagcaccatttgattctacacctaacaaagttga |
31760802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 145 - 536
Target Start/End: Complemental strand, 31767961 - 31767570
Alignment:
| Q |
145 |
gttcactcattcaactttttctagctagtatatataagattaacaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaag |
244 |
Q |
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| T |
31767961 |
gttcactcattcaactttttctagctagtatatataagattgacaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaag |
31767862 |
T |
|
| Q |
245 |
tgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaattt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
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| T |
31767861 |
tgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcacaaattt |
31767762 |
T |
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| Q |
345 |
caagtctcatggacttaaccttaaggacttggttgttctatctggtggacacacaattggattttccaaatgcactaactttagggacaggatctacaat |
444 |
Q |
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|||||| |||||||| |||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
31767761 |
caagtcacatggactaaaccttaaagatttagttgttctatctggtggtcacacaattggattttccaaatgcactaactttagaaataggatctacaat |
31767662 |
T |
|
| Q |
445 |
gacaccaacatagacaccaattttgctgccaatttgcaaaagacatgccctcgtattggcggcaacgataatttagcaccatttgattctac |
536 |
Q |
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| T |
31767661 |
gacaccaacctagacaccaactttgctgccaatttgcaaaagacatgccctaaaatcggcggcgatgacaatctagcaccatttgattctac |
31767570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 188 - 551
Target Start/End: Original strand, 31749547 - 31749914
Alignment:
| Q |
188 |
caactaacaaattttgctt----caattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcaggg |
283 |
Q |
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||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31749547 |
caactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagag |
31749646 |
T |
|
| Q |
284 |
atgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaaccttaaggacttggttgttct |
383 |
Q |
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||||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
31749647 |
atgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcaaaaatttcaagtcacatggactaaaccttaaggacttagttgttct |
31749746 |
T |
|
| Q |
384 |
atctggtggacacacaattggattttccaaatgcactaactttagggacaggatctacaatgacaccaacatagacaccaattttgctgccaatttgcaa |
483 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
31749747 |
atctggtggacacacaattggattttccaaatgcactaactttagaaacagaatctacaatgacaccaacatagacaaaaaatttgcagccaatttgcaa |
31749846 |
T |
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| Q |
484 |
aagacatgccctcgtattggcggcaacgataatttagcaccatttgattctacacctaacaaagttga |
551 |
Q |
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| T |
31749847 |
aagacatgtcctcaaatcggcggcgacaataatttagcgccatttgattctactcctaacaaagttga |
31749914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 187 - 536
Target Start/End: Complemental strand, 31753554 - 31753205
Alignment:
| Q |
187 |
acaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatg |
286 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
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| T |
31753554 |
acaactaacaaattttgcatcaattaacagttgggcggtcacaaatattggtaccaagtgttactgggcagaagagattcaagatttgcaagcagagatg |
31753455 |
T |
|
| Q |
287 |
cagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaaccttaaggacttggttgttctatc |
386 |
Q |
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||||||||| ||||||||| || ||||||| || ||||||||||||||| ||||||| ||||||| ||||| |||||||| ||||| ||||||||||| |
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| T |
31753454 |
cagcaaatataaatcttccaccggcattttttaacttctcacaactcatcgcaaattttcagtctcaaggactaaaccttaaagacttagttgttctatc |
31753355 |
T |
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| Q |
387 |
tggtggacacacaattggattttccaaatgcactaactttagggacaggatctacaatgacaccaacatagacaccaattttgctgccaatttgcaaaag |
486 |
Q |
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|||||| ||||||||||||||||| | ||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
31753354 |
tggtggtcacacaattggattttcaagatgtactaactttagaagcaggatcttcaatgacaccaacataaacaccaattttgcagccaatttgcaaaag |
31753255 |
T |
|
| Q |
487 |
acatgccctcgtattggcggcaacgataatttagcaccatttgattctac |
536 |
Q |
| |
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||||||||| | ||||||||| | || ||||||||||||||||||||||| |
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| T |
31753254 |
acatgccctagaattggcggcgatgacaatttagcaccatttgattctac |
31753205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 31768091 - 31768001
Alignment:
| Q |
15 |
ttctacaatacaagtttatagcattaccacaaccgaaactctaatttaaaaccatgtttaaatcaaactctaaatattaaagggcactcgt |
105 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
31768091 |
ttctacaatacaagtttatagcattaccgcaaccgaaactctaatttaaaaccatgtttaaatcaaacactaaatattgaaggacactcgt |
31768001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 27887869 - 27887907
Alignment:
| Q |
232 |
tattggtaccaagtgttactaggaagaagagattcaaga |
270 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
27887869 |
tattggtaccaagtgctactaggaagaagagatgcaaga |
27887907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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