View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15716_low_7 (Length: 233)
Name: NF15716_low_7
Description: NF15716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15716_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 29060349 - 29060241
Alignment:
| Q |
116 |
agtcatgaacttgttgtcaggatggtgaacaagtaagaataaggacacccttgattttcttttccttgatttattggttattgtgccatttgagatgttg |
215 |
Q |
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| T |
29060349 |
agtcatgaacttgttgtcaggatggtgaacaagtaagaataaggacacccttgattttctttttcttgatttattggttattgtgtcatttgagatgttg |
29060250 |
T |
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| Q |
216 |
ttgatgatg |
224 |
Q |
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| T |
29060249 |
ttgatgatg |
29060241 |
T |
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Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 48834707 - 48834599
Alignment:
| Q |
116 |
agtcatgaacttgttgtcaggatggtgaacaagtaagaataaggacacccttgattttcttttccttgatttattggttattgtgccatttgagatgttg |
215 |
Q |
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| T |
48834707 |
agtcatgaacttgttgtcaggatggtgaacaagtaagaataaggacacccttgattttctttttcttgatttattggttattgtgtcatttgagatgttg |
48834608 |
T |
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| Q |
216 |
ttgatgatg |
224 |
Q |
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| T |
48834607 |
ttgatgatg |
48834599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 1805477 - 1805585
Alignment:
| Q |
57 |
ctgatctgggtatgtgttattttctttattattagagcatgttgaaaaa--ccattttgatagtcatgaactt--gttgtcaggatggtgaacaagtaag |
152 |
Q |
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| T |
1805477 |
ctgatctgggtctgtcttattttcttcattattagagcatgttgaaaaaacccattttgttcaccatgaactttattagtcaggatgttgaacaagtaag |
1805576 |
T |
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| Q |
153 |
aataaggac |
161 |
Q |
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| T |
1805577 |
aataaggac |
1805585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 6640126 - 6640242
Alignment:
| Q |
57 |
ctgatctgggtatgtgttattttctttattattagagcatgttgaaaaaccattttgatagtcatgaacttgtt-gtcaggatggtgaacaagtaagaat |
155 |
Q |
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| T |
6640126 |
ctgatctgggtttgtgttatttttttcatttttagagcatgctgaaaaacccttttgatcaccacgaacttgttcgtaatgatgttgaacaagtaaggat |
6640225 |
T |
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| Q |
156 |
aaggacacccttgattt |
172 |
Q |
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| T |
6640226 |
aagagcacccttgattt |
6640242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 32321150 - 32321258
Alignment:
| Q |
57 |
ctgatctgggtatgtgttattttctttattattagagcatgttgaaaaa--ccattttgatagtcatgaactt--gttgtcaggatggtgaacaagtaag |
152 |
Q |
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||||||||||| || |||||||||| |||||||||| ||||||||||| |||||||||| ||||||||| | ||||||||| |||||||||||| |
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| T |
32321150 |
ctgatctgggtttgacttattttcttcattattagagtatgttgaaaaaacccattttgatcaccatgaactttattagtcaggatgctgaacaagtaag |
32321249 |
T |
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| Q |
153 |
aataaggac |
161 |
Q |
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| T |
32321250 |
aataaggac |
32321258 |
T |
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