View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15716_low_8 (Length: 229)

Name: NF15716_low_8
Description: NF15716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15716_low_8
NF15716_low_8
[»] chr1 (21 HSPs)
chr1 (20-196)||(38821658-38821834)
chr1 (20-125)||(8723140-8723245)
chr1 (20-116)||(36564178-36564273)
chr1 (20-125)||(42734872-42734975)
chr1 (49-125)||(5257175-5257251)
chr1 (20-116)||(10427576-10427672)
chr1 (52-116)||(47401836-47401900)
chr1 (23-116)||(41103528-41103614)
chr1 (49-125)||(4790327-4790403)
chr1 (100-136)||(6732062-6732098)
chr1 (20-116)||(44041053-44041149)
chr1 (33-116)||(38471071-38471154)
chr1 (99-133)||(8702997-8703031)
chr1 (89-118)||(2022354-2022383)
chr1 (32-113)||(27322869-27322950)
chr1 (20-116)||(31239128-31239225)
chr1 (88-125)||(43578355-43578392)
chr1 (87-116)||(44689093-44689122)
chr1 (69-125)||(21781461-21781516)
chr1 (20-136)||(40799076-40799191)
chr1 (100-128)||(50684517-50684545)
[»] chr2 (17 HSPs)
chr2 (20-116)||(740485-740581)
chr2 (32-125)||(15504933-15505026)
chr2 (21-116)||(741171-741266)
chr2 (23-133)||(40859885-40859995)
chr2 (20-133)||(44019533-44019647)
chr2 (24-125)||(28417052-28417153)
chr2 (20-116)||(38502313-38502408)
chr2 (35-125)||(3752379-3752466)
chr2 (56-116)||(6786616-6786676)
chr2 (20-108)||(9546013-9546101)
chr2 (20-76)||(12599586-12599642)
chr2 (20-75)||(1071724-1071779)
chr2 (20-63)||(29754597-29754640)
chr2 (78-125)||(35155906-35155953)
chr2 (20-109)||(33201302-33201391)
chr2 (20-117)||(42439773-42439870)
chr2 (20-116)||(8785267-8785363)
[»] chr7 (19 HSPs)
chr7 (21-125)||(6112216-6112319)
chr7 (20-136)||(24650038-24650153)
chr7 (20-116)||(24862525-24862621)
chr7 (21-116)||(27425561-27425656)
chr7 (20-101)||(28069564-28069645)
chr7 (37-126)||(45884264-45884353)
chr7 (20-116)||(7814211-7814307)
chr7 (20-125)||(19062922-19063019)
chr7 (52-124)||(7814334-7814406)
chr7 (49-125)||(47437708-47437784)
chr7 (24-133)||(18802532-18802642)
chr7 (36-125)||(16686194-16686283)
chr7 (36-125)||(17660430-17660519)
chr7 (101-133)||(1441734-1441766)
chr7 (22-84)||(10039895-10039957)
chr7 (20-73)||(28737256-28737309)
chr7 (100-133)||(32310917-32310950)
chr7 (93-125)||(32806700-32806732)
chr7 (93-125)||(45883919-45883951)
[»] chr5 (20 HSPs)
chr5 (20-116)||(5856315-5856411)
chr5 (20-114)||(14052125-14052219)
chr5 (21-116)||(29632777-29632872)
chr5 (20-116)||(1135197-1135293)
chr5 (20-116)||(33857861-33857957)
chr5 (21-125)||(35588456-35588560)
chr5 (21-113)||(36483560-36483652)
chr5 (20-114)||(18050084-18050178)
chr5 (71-125)||(40293137-40293191)
chr5 (20-117)||(18282699-18282796)
chr5 (20-116)||(33761357-33761452)
chr5 (21-116)||(3945054-3945148)
chr5 (21-87)||(14000752-14000818)
chr5 (21-114)||(43222371-43222464)
chr5 (56-116)||(23196906-23196965)
chr5 (21-125)||(42503829-42503933)
chr5 (78-125)||(14930516-14930563)
chr5 (21-116)||(14000975-14001066)
chr5 (20-84)||(7123702-7123765)
chr5 (93-125)||(43530435-43530467)
[»] chr4 (21 HSPs)
chr4 (20-116)||(46250776-46250872)
chr4 (21-125)||(52635821-52635925)
chr4 (20-125)||(3091872-3091976)
chr4 (20-116)||(47806422-47806517)
chr4 (71-125)||(38490777-38490831)
chr4 (20-116)||(31106223-31106318)
chr4 (55-125)||(16554657-16554727)
chr4 (21-110)||(645733-645822)
chr4 (71-116)||(26877108-26877153)
chr4 (21-136)||(4505866-4505982)
chr4 (78-130)||(35519510-35519562)
chr4 (20-116)||(37442745-37442841)
chr4 (20-84)||(43028194-43028258)
chr4 (78-121)||(23970966-23971009)
chr4 (71-116)||(26877547-26877592)
chr4 (89-130)||(39331835-39331876)
chr4 (93-125)||(2684363-2684395)
chr4 (52-116)||(10214213-10214277)
chr4 (93-125)||(19546088-19546120)
chr4 (21-85)||(28513559-28513623)
chr4 (21-65)||(35519464-35519508)
[»] chr8 (17 HSPs)
chr8 (20-116)||(39199323-39199418)
chr8 (20-116)||(9007454-9007552)
chr8 (21-136)||(34151178-34151294)
chr8 (20-116)||(45521558-45521654)
chr8 (20-111)||(34142840-34142931)
chr8 (20-121)||(3501294-3501395)
chr8 (26-107)||(10794541-10794622)
chr8 (54-116)||(29773262-29773324)
chr8 (21-116)||(37252616-37252709)
chr8 (20-125)||(1351768-1351873)
chr8 (20-113)||(31261214-31261307)
chr8 (21-118)||(45413903-45413999)
chr8 (79-134)||(44148520-44148575)
chr8 (20-117)||(24314166-24314260)
chr8 (37-114)||(34968303-34968380)
chr8 (20-84)||(6629218-6629282)
chr8 (57-121)||(36068518-36068582)
[»] chr6 (6 HSPs)
chr6 (22-114)||(14690860-14690952)
chr6 (21-118)||(9155361-9155455)
chr6 (24-116)||(32279492-32279584)
chr6 (21-124)||(29729052-29729155)
chr6 (20-84)||(3842027-3842091)
chr6 (95-125)||(12808556-12808586)
[»] scaffold0047 (1 HSPs)
scaffold0047 (20-84)||(65616-65680)
[»] chr3 (12 HSPs)
chr3 (20-116)||(47411117-47411213)
chr3 (20-117)||(47410394-47410490)
chr3 (37-116)||(40940686-40940765)
chr3 (22-116)||(21594371-21594465)
chr3 (101-133)||(38374091-38374123)
chr3 (52-116)||(38374129-38374193)
chr3 (20-116)||(39199043-39199139)
chr3 (20-63)||(51283736-51283779)
chr3 (87-125)||(51284099-51284137)
chr3 (19-63)||(16738291-16738335)
chr3 (93-125)||(32758211-32758243)
chr3 (20-116)||(35965476-35965572)
[»] scaffold0221 (1 HSPs)
scaffold0221 (20-116)||(10604-10700)
[»] scaffold0003 (1 HSPs)
scaffold0003 (94-125)||(351006-351037)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 38821834 - 38821658
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    |||||| |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821834 gttatactgttggtatcattgaaaaatagaagtataatttgttacaatttgaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 38821735  T
Q  120 ataaaactattgtttgtgctaggttaacttatcatcttggtaattgtcttaaggcatactatacttgacacaggttc 196  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||    
T  38821734 ataaaactatcgtttgtgctaggttaacttatcatcttgttaattgtcttaaggcatactctacttgacgcaggttc 38821658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 8723245 - 8723140
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    |||||||||||||||||||||||||  | || |||| ||  | | ||||| ||| || ||| |||||||||| |||||| ||||||||||||||||||||    
T  8723245 gttatattgttggtatcattgaaaacgataagtatatttgatgacaatttgaaaatgtaaagtattcattatctataccaataattttaatcaaaatttc 8723146  T
Q  120 ataaaa 125  Q
    ||||||    
T  8723145 ataaaa 8723140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 36564178 - 36564273
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||||||||||||||| |||||||| ||||||| |||| |||||| | |||| | |||||||  ||||||||||  ||||||||||||||||||    
T  36564178 gttatattgttggtatcatcgaaaaatataaatatagtttg-tataatatgaaagggtaaaatatctattatttataggtataattttaatcaaaat 36564273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 42734872 - 42734975
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    ||||| |||||| |||||| |||||| | || |||||||| ||| |||||||||||| |||||||| ||||| ||||| ||| |||||||||||| ||||    
T  42734872 gttatgttgttgatatcatcgaaaaa-ataagtataattttttacaatttaaaagtgtaaaatatttattatctatacttat-attttaatcaaagtttc 42734969  T
Q  120 ataaaa 125  Q
    ||||||    
T  42734970 ataaaa 42734975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 5257175 - 5257251
Alignment:
Q  49 aaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    ||||||| ||||||| ||| | |||||| |||||||  ||||| ||| |||||||||||||||||||||||||||||    
T  5257175 aaatatagtttgttacaatatgaaagtgcaaaatatctattatctatgcctataattttaatcaaaatttcataaaa 5257251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 10427576 - 10427672
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||| ||||||||||||| | || |||||||| ||| ||| | |||||  |||||||  ||||| ||||||||||||||| || |||||    
T  10427576 gttatattgttgatatcattgaaaaaaataagtataatttattacaatatgaaagtacaaaatatctattatctatacctataattttgattaaaat 10427672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 47401836 - 47401900
Alignment:
Q  52 tataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||| ||| | ||| || |||||||  ||||||||||||||||||||||||||||||    
T  47401836 tataatttgttacaatatgaaaatgcaaaatatctattatttatacctataattttaatcaaaat 47401900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 41103528 - 41103614
Alignment:
Q  23 atattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||||||||||||||||||| | | ||||||||||||| ||| ||||| ||| ||      | ||||||||||||||||||||||||||||    
T  41103528 atattgttggtatcattgaaaaaaatagatataatttgttacaatataaaa-tgataa------aatatttatacctataattttaatcaaaat 41103614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 4790327 - 4790403
Alignment:
Q  49 aaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    ||||||| ||||||||||| | ||| |  |||||||  ||||||||||  ||||||||| |||||||||||||||||    
T  4790327 aaatatagtttgttataatatgaaattacaaaatatctattatttatatttataattttgatcaaaatttcataaaa 4790403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 6732098 - 6732062
Alignment:
Q  100 ataattttaatcaaaatttcataaaactattgtttgt 136  Q
    ||||||||||||||||||||||||||||||| |||||    
T  6732098 ataattttaatcaaaatttcataaaactattatttgt 6732062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 44041053 - 44041149
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||||||||||| | || |||| ||||||||| | | |||||  ||||| |  ||||| ||||| |||| |||| ||||||||    
T  44041053 gttatattgttggtatcattgaaaaaaataagtatattttgttatagtattaaagtacaaaatgtctattatctatacatatactttttatcaaaat 44041149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 38471071 - 38471154
Alignment:
Q  33 tatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||  ||||||  |||||||||||||| ||| | |||| | |||||||  ||||||||||| |||| |||||||||||||    
T  38471071 tatcattataaaatatgaatataatttgttacaatatgaaagagcaaaatatctattatttatacatatacttttaatcaaaat 38471154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 8703031 - 8702997
Alignment:
Q  99 tataattttaatcaaaatttcataaaactattgtt 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  8703031 tataattttaatcaaaatttcataaaactactgtt 8702997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 2022354 - 2022383
Alignment:
Q  89 tatttatacctataattttaatcaaaattt 118  Q
    ||||||||||||||||||||||||||||||    
T  2022354 tatttatacctataattttaatcaaaattt 2022383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 27322869 - 27322950
Alignment:
Q  32 gtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaa 113  Q
    |||||||||||||||| || |||| ||||||||||| | |||||| ||||||   ||||| ||||   ||||||||||||||    
T  27322869 gtatcattgaaaaatataagtatagtttgttataatattaaagtgcaaaatacctattatctatagaaataattttaatcaa 27322950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 31239128 - 31239225
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtg-aaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||| ||| |||| |||||||| | || |||| ||||||| ||| | |||||| ||||||||| ||||| ||||| |||| |||||| ||||||    
T  31239128 gttatattcttgatatccttgaaaaagataagtatagtttgttacaatatgaaagtgaaaaaatatttattatctatacatatatttttaaccaaaat 31239225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 43578392 - 43578355
Alignment:
Q  88 ttatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  43578392 ttatctatacttataattttaatcaaaatttcataaaa 43578355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 44689122 - 44689093
Alignment:
Q  87 attatttatacctataattttaatcaaaat 116  Q
    ||||||||||||||||||||||||||||||    
T  44689122 attatttatacctataattttaatcaaaat 44689093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 21781516 - 21781461
Alignment:
Q  69 taaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||||  |||||||  ||||| ||||| |||||||||||||||||||||||||||    
T  21781516 taaaagtacaaaatatatattatctatac-tataattttaatcaaaatttcataaaa 21781461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 40799191 - 40799076
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    |||||||||||| ||||||||||||  | || |||| | ||||| ||| |  ||||| |||||||  |||||||||| |||||||||||||  |||  |     
T  40799191 gttatattgttg-tatcattgaaaaggataattatagtatgttacaatatggaagtgcaaaatatatattatttatatctataattttaatagaaaaatt 40799093  T
Q  120 ataaaactattgtttgt 136  Q
    |||||| ||||||||||    
T  40799092 ataaaaatattgtttgt 40799076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 50684545 - 50684517
Alignment:
Q  100 ataattttaatcaaaatttcataaaacta 128  Q
    |||||||||||||||||||||||||||||    
T  50684545 ataattttaatcaaaatttcataaaacta 50684517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 740581 - 740485
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||||||||||| | || |||| ||||||| ||| ||||||||||||||||  || || ||||||||||||||||||||||||    
T  740581 gttatattgttggtatcattgaaaaagataagtatagtttgttacaatataaaagtgaaaaatatctatcatctatacctataattttaatcaaaat 740485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 15504933 - 15505026
Alignment:
Q  32 gtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||||||||| ||| || |||| ||||| | ||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  15504933 gtatcattgaaatatataagtatagtttgtgacaatataaaagtgtaaaatatctattatttatacctataattttaatcaaaatttcataaaa 15505026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 741266 - 741171
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||||||||||||||||||||| | || |||| ||||||| ||| | ||||| ||||||||  || || ||||||||||||||||||||||||    
T  741266 ttatattgttggtatcattgaaaaaaataagtatagtttgttacaatatgaaagtaaaaaatatctatcatctatacctataattttaatcaaaat 741171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 40859885 - 40859995
Alignment:
Q  23 atattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttca-t 121  Q
    ||||||||||||||||||||||| | || |||| |||| || ||| | |||  |||||||||| ||||| |||||| ||||||||||||||||||||| |    
T  40859885 atattgttggtatcattgaaaaagataagtatagtttggtacaatatgaaaa-gaaaaatatttattatctataccaataattttaatcaaaatttcatt 40859983  T
Q  122 aaaactattgtt 133  Q
    ||||||||||||    
T  40859984 aaaactattgtt 40859995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 44019533 - 44019647
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    |||||||| ||| |||||||||||| || || |||| ||||||| ||| | |||||| |||||||  |||||  ||||||| |||||||||||| |||||    
T  44019533 gttatatttttgatatcattgaaaagtataagtatagtttgttacaatatgaaagtgcaaaatatctattataaatacctacaattttaatcaatatttc 44019632  T
Q  120 at-aaaactattgtt 133  Q
    || ||||||||||||    
T  44019633 ataaaaactattgtt 44019647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 28417052 - 28417153
Alignment:
Q  24 tattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataa 123  Q
    |||| |||||||| |||| ||| | ||||||||||| ||||||| | |||||| |||||||  ||||| |||| ||||||| |||||||||||||| |||    
T  28417052 tattattggtatcgttgagaaagataaatataatttattataatatgaaagtgcaaaatatatattatctataactataatcttaatcaaaatttcttaa 28417151  T
Q  124 aa 125  Q
    ||    
T  28417152 aa 28417153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 38502313 - 38502408
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||||||||||| | || |||| ||||||| ||| | || ||| |||||||  | ||| ||||||||||||||||||||||||    
T  38502313 gttatattgttggtatcattgaaaaagataagtatagtttgttacaatatgaaggtgcaaaatatata-tatctatacctataattttaatcaaaat 38502408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 3752466 - 3752379
Alignment:
Q  35 tcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    ||||||||||||| ||||||| ||||||| ||| | ||| |  |||||||   | |||||||||||||||||||||| |||||||||||||    
T  3752466 tcattgaaaaatataaatatagtttgttacaatatgaaaattcaaaatat---taatttatacctataattttaatcgaaatttcataaaa 3752379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 6786676 - 6786616
Alignment:
Q  56 atttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||| ||| | |||||| |||||||  |||||| |||||||||||||||||||||||    
T  6786676 atttgttacaatatgaaagtgcaaaatatctattattcatacctataattttaatcaaaat 6786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 9546101 - 9546013
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataatttta 108  Q
    |||||||||||||||||||  ||||| | ||  ||||||||||| ||| | |||||| ||||| |  ||||||||||||||| ||||||    
T  9546101 gttatattgttggtatcatccaaaaagataagaataatttgttacaatatgaaagtgcaaaatgtctattatttatacctatgatttta 9546013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 12599586 - 12599642
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtg 76  Q
    |||||||| ||||||| ||||||||| | ||||||||||| ||||||| ||||||||    
T  12599586 gttatattattggtataattgaaaaagataaatataatttattataatataaaagtg 12599642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 1071724 - 1071779
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagt 75  Q
    ||||||||||| || ||||||||||||| ||| || |||||||| |||||||||||    
T  1071724 gttatattgttagtgtcattgaaaaatataaacatgatttgttacaatttaaaagt 1071779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 29754640 - 29754597
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgtta 63  Q
    |||||||||||||||||||||||||| | || ||||||||||||    
T  29754640 gttatattgttggtatcattgaaaaagataagtataatttgtta 29754597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 35155906 - 35155953
Alignment:
Q  78 aaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||||  ||||| |||||||| ||||||||||||||||||||||||    
T  35155906 aaaatatctattatatatacctaaaattttaatcaaaatttcataaaa 35155953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 33201302 - 33201391
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaa 109  Q
    |||||||||||||||||||| ||||||| || |||| ||||||| ||| | |||    |||||||  ||||| ||||| |||||||||||    
T  33201302 gttatattgttggtatcatttaaaaatataattatagtttgttaaaatatgaaaacagaaaatatctattatctatacatataattttaa 33201391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 42439870 - 42439773
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatt 117  Q
    |||||||| || |||| ||||||||| | || |||| ||| |||||   | ||||||||||| ||  ||||| |||| ||||||||||||||||||||    
T  42439870 gttatattattagtattattgaaaaaaataagtatagtttattatagcatgaaagtgaaaaaaatatattatctatatctataattttaatcaaaatt 42439773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 8785267 - 8785363
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||| |||| ||||  |||| | || |||||||| ||| ||| | |||||| |||||||  |||||||  ||||||||||||||| |||||    
T  8785267 gttatattgtaggtaacatttgaaaagataagtataatttattacaatatgaaagtgcaaaatatctattatttccacctataattttaatgaaaat 8785363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 6112319 - 6112216
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttca 120  Q
    ||||||||||||||||||||||||  | || |||||||||||| ||| ||||| ||||||||||| ||||| |||  ||||||||||||||||||| |||    
T  6112319 ttatattgttggtatcattgaaaataataagtataatttgttacaatataaaaatgaaaaatatttattatatat-tctataattttaatcaaaatctca 6112221  T
Q  121 taaaa 125  Q
    |||||    
T  6112220 taaaa 6112216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 24650038 - 24650153
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    |||||||||||||||||||||||||| | ||||| | ||| ||| ||| | |||||| |||||||  ||||| ||||  |||||||||| ||||||||||    
T  24650038 gttatattgttggtatcattgaaaaa-ataaatacagtttattacaatatgaaagtgtaaaatatatattatctataaatataattttattcaaaatttc 24650136  T
Q  120 ataaaactattgtttgt 136  Q
    |||||| ||||||||||    
T  24650137 ataaaaatattgtttgt 24650153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 24862525 - 24862621
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||||| |||||| ||||||||| | || |||||||||||||||| | || ||  ||| |||  ||||||||||||||||||||||||||||||    
T  24862525 gttatattgctggtataattgaaaaagataagtataatttgttataatatgaaggtacaaattatatattatttatacctataattttaatcaaaat 24862621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 27425656 - 27425561
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||| ||||| |||||||| | || |||| ||||||||||| | |||||| |||||||  ||||| ||||| ||||||||||||||||||    
T  27425656 ttatattgttagtatctttgaaaaagataagtatagtttgttataatatgaaagtgcaaaatatctattatctatacatataattttaatcaaaat 27425561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 28069645 - 28069564
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctat 101  Q
    |||||||||||||||| ||| ||||| | |||| |||||||||| ||| |||||||| |||||||| ||||| |||||||||    
T  28069645 gttatattgttggtattattcaaaaagataaatttaatttgttacaatataaaagtgcaaaatatttattatatatacctat 28069564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 45884264 - 45884353
Alignment:
Q  37 attgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaac 126  Q
    ||||||||| | || |||| ||||||| ||| |||| ||| |||||||  ||||| |||||||||||||||||||||||||||| |||||    
T  45884264 attgaaaaaaataagtatagtttgttacaatataaatgtgcaaaatatctattatctatacctataattttaatcaaaatttcaaaaaac 45884353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 7814211 - 7814307
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||| ||||||||||| ||||||||| | || |||||||||||| ||| | |||||  |||||||  |||||||| ||||| |||||||||||||||    
T  7814211 gttacattgttggtattattgaaaaagataagtataatttgttacaatatgaaagtacaaaatatctattatttaaacctacaattttaatcaaaat 7814307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 19062922 - 19063019
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    |||||||||||||||| ||||||||| | || |||| |||||||        ||||| |||||||  ||| |||||||||||||||||||||||||||||    
T  19062922 gttatattgttggtattattgaaaaagataattatagtttgtta--------aagtgcaaaatatatattttttatacctataattttaatcaaaatttc 19063013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 7814334 - 7814406
Alignment:
Q  52 tataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaa 124  Q
    |||| ||||||| ||| | |||||  |||||||  |||||||||||||| |||||||||||||||||||||||    
T  7814334 tatagtttgttacaatatgaaagtacaaaatatatattatttatacctacaattttaatcaaaatttcataaa 7814406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 47437784 - 47437708
Alignment:
Q  49 aaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||||||||||||||||   ||| || |||||||  |||||||||||||| |||||||||||| |||| ||||||    
T  47437784 aaatataatttgttataatacgaaaatgcaaaatatctattatttatacctaaaattttaatcaacattttataaaa 47437708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 18802532 - 18802642
Alignment:
Q  24 tattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcat-a 122  Q
    ||||||||||| |||||||||| | | ||||||| |||||| || |  ||||  |||||||  ||||||| |  ||||||||||||| |||||||||| |    
T  18802532 tattgttggtaccattgaaaaagatatatataatatgttatgatatggaagttgaaaatatctattatttgtgtctataattttaattaaaatttcataa 18802631  T
Q  123 aaactattgtt 133  Q
    |||||||||||    
T  18802632 aaactattgtt 18802642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 16686283 - 16686194
Alignment:
Q  36 cattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||||||| | || ||| |||| ||||||| | |||  | |||||||  ||| | |||||||||||||||||||||||||||||||||    
T  16686283 cattgaaaaagataactatgatttattataatgtgaaaaagcaaaatatctattttctatacctataattttaatcaaaatttcataaaa 16686194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 17660519 - 17660430
Alignment:
Q  36 cattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||||||| | || ||| |||| ||||||| | |||  | |||||||  ||| | |||||||||||||||||||||||||||||||||    
T  17660519 cattgaaaaagataactatgatttattataatgtgaaaaagcaaaatatctattttctatacctataattttaatcaaaatttcataaaa 17660430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 1441734 - 1441766
Alignment:
Q  101 taattttaatcaaaatttcataaaactattgtt 133  Q
    |||||||||||||||||||||||||||||||||    
T  1441734 taattttaatcaaaatttcataaaactattgtt 1441766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 10039957 - 10039895
Alignment:
Q  22 tatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatat 84  Q
    |||||||||||| ||||||||||| | ||||||||||||||| ||| | ||| || |||||||    
T  10039957 tatattgttggtgtcattgaaaaagataaatataatttgttacaatatgaaattgcaaaatat 10039895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 28737309 - 28737256
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaa 73  Q
    |||||||||||| | ||||||||||| | |||| || |||||||||||||||||    
T  28737309 gttatattgttgatgtcattgaaaaagataaatttagtttgttataatttaaaa 28737256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 32310917 - 32310950
Alignment:
Q  100 ataattttaatcaaaatttcataaaactattgtt 133  Q
    |||||||||||||||||||||||||| |||||||    
T  32310917 ataattttaatcaaaatttcataaaaatattgtt 32310950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 32806700 - 32806732
Alignment:
Q  93 tatacctataattttaatcaaaatttcataaaa 125  Q
    ||||||||| |||||||||||||||||||||||    
T  32806700 tatacctattattttaatcaaaatttcataaaa 32806732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 45883951 - 45883919
Alignment:
Q  93 tatacctataattttaatcaaaatttcataaaa 125  Q
    ||||| |||||||||||||||||||||||||||    
T  45883951 tatacgtataattttaatcaaaatttcataaaa 45883919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 5856411 - 5856315
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||||||||| | | || |||| ||||||| ||| |||||||| |||||||  ||||| ||||||||||||||||||||||||    
T  5856411 gttatattgttggtatcattgaaacagataagtatagtttgttacaatataaaagtgcaaaatatctattatctatacctataattttaatcaaaat 5856315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 14052219 - 14052125
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaa 114  Q
    |||||||||||||||||||||||||| | || |||| ||||||||||| | |||||| |||||||  ||||| |||| |||||||||||||||||    
T  14052219 gttatattgttggtatcattgaaaaagataattatagtttgttataatatgaaagtgcaaaatatctattatctatagctataattttaatcaaa 14052125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 29632777 - 29632872
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||||||| ||||||||||||||| || |||||||||||| ||| | ||| || |||||||  ||||| ||||||||||||||| || |||||    
T  29632777 ttatattgttgatatcattgaaaaatataagtataatttgttacaatatgaaaatgtaaaatatctattatctatacctataatttttattaaaat 29632872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 1135197 - 1135293
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||||| |||||||||||||||||| ||  ||||||||||| ||| | ||| || |||||||  ||||| ||||| ||||||||||||| ||||    
T  1135197 gttatattggtggtatcattgaaaaatataagaataatttgttacaatatgaaaatgtaaaatatctattatctatacatataattttaatctaaat 1135293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 33857861 - 33857957
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||| |||||||||||| | ||||| | || |||| ||||||| ||| | ||| ||||||||||| || || ||||||||||||||||||||||||    
T  33857861 gttatgttgttggtatcactaaaaaagataagtatagtttgttacaatatgaaaatgaaaaatatttatcatctatacctataattttaatcaaaat 33857957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 35588560 - 35588456
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttca 120  Q
    ||||||||||| ||| ||| ||||| | || |||| ||||||| |||   |||||  |||||||  ||||||||||||||||||||||||||||||||||    
T  35588560 ttatattgttgatattatttaaaaagataattatagtttgttacaatacgaaagtacaaaatatctattatttatacctataattttaatcaaaatttca 35588461  T
Q  121 taaaa 125  Q
     ||||    
T  35588460 aaaaa 35588456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 36483652 - 36483560
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaa 113  Q
    ||||||| ||| || |||||||||| | || |||| ||||||| ||| ||||| ||||||||||  ||||| |||||||||||||||||||||    
T  36483652 ttatatttttgttaacattgaaaaagataattatagtttgttacaatataaaattgaaaaatatctattatctatacctataattttaatcaa 36483560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 18050178 - 18050084
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaa 114  Q
    ||||||| ||| | ||||||||| || | ||||||| |||||| |||| | ||||||||||||||| |||| || ||| ||||||||||||||||    
T  18050178 gttatatcgtttgcatcattgaataaaataaatatagtttgttgtaatatgaaagtgaaaaatatttattacttgtacttataattttaatcaaa 18050084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 40293137 - 40293191
Alignment:
Q  71 aaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||| |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  40293137 aaagtgcaaaatatttagtatctatacctataattttaatcaaaatttcataaaa 40293191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 18282796 - 18282699
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatt 117  Q
    |||||||||||| |||||||| |||| | || |||| ||| ||||| | | |||||| |||||||  ||||| |||||||||||| ||||||||||||    
T  18282796 gttatattgttgttatcattggaaaaaataagtatagtttcttatattatgaaagtgcaaaatatctattatctatacctataatgttaatcaaaatt 18282699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 33761357 - 33761452
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||| ||||||| || ||||||||| | || |||||||| ||| ||| |||||||| |||||||  |  |||||||||||||||||||||||||||    
T  33761357 gttattttgttggcataattgaaaaagataagtataatttattacaatataaaagtgcaaaatatctac-atttatacctataattttaatcaaaat 33761452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 3945148 - 3945054
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||| || |||||||||||||||| || |||| ||||||| ||| |  ||||| |||||||| ||||| ||||||||| ||||| ||||||||    
T  3945148 ttatattatttgtatcattgaaaaatataagtatagtttgttacaatat-gaagtgcaaaatatttattatctatacctatcattttgatcaaaat 3945054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 14000818 - 14000752
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattca 87  Q
    ||||||||||||||||||||||||||| || |||| ||||||| | | | |||||| ||||||||||    
T  14000818 ttatattgttggtatcattgaaaaatataagtatagtttgttacactatgaaagtgcaaaatattca 14000752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 43222371 - 43222464
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaa 114  Q
    ||||||||||||||||||| ||||| | || |||| ||||||||||  | ||| || |||||||  ||||||||||| || | |||||||||||    
T  43222371 ttatattgttggtatcattcaaaaagataagtatagtttgttataacattaaaatgtaaaatatatattatttatacataaagttttaatcaaa 43222464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 23196906 - 23196965
Alignment:
Q  56 atttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||||| ||||||||| | ||||||||  |||| |||||||||||||    
T  23196906 atttgttataatttaaaagtaaaaaatattta-tatttatatttatatttttaatcaaaat 23196965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 42503829 - 42503933
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttca 120  Q
    ||||||||||||||| ||| ||||||| || || | ||||||| ||  | |||||  |||||||  || ||  ||||||||||||||||| |||||||||    
T  42503829 ttatattgttggtataattaaaaaatataagtaaagtttgttacaacatgaaagtagaaaatatctatcatcgatacctataattttaattaaaatttca 42503928  T
Q  121 taaaa 125  Q
    |||||    
T  42503929 taaaa 42503933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 14930516 - 14930563
Alignment:
Q  78 aaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||||  ||||| |||||||||||||||||||||||||| ||||||    
T  14930516 aaaatataaattatatatacctataattttaatcaaaattttataaaa 14930563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 14001066 - 14000975
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||| |||||||| ||||||||  | ||||||| || |||||||| |||||||    |||||  ||||| ||| ||||||||||||||||||||    
T  14001066 ttatatagttggtattattgaaaatgataaatatagttcgttataatataaaagt----aatatctattatctatgcctataattttaatcaaaat 14000975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 7123765 - 7123702
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatat 84  Q
    |||||||||||||| ||||||||||| | || |||| |||| |||||| |||||||| |||||||    
T  7123765 gttatattgttggtgtcattgaaaaa-ataattatagtttgctataatataaaagtgcaaaatat 7123702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 43530467 - 43530435
Alignment:
Q  93 tatacctataattttaatcaaaatttcataaaa 125  Q
    ||||||||| |||||||||||||||||||||||    
T  43530467 tatacctatgattttaatcaaaatttcataaaa 43530435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 46250872 - 46250776
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||||||||||| | || |||||||||||| ||| |||| ||| |||||||  ||||| |||||||||||||||||| |||||    
T  46250872 gttatattgttggtatcattgaaaaagataagtataatttgttacaatataaatgtggaaaatatatattatatatacctataattttaattaaaat 46250776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 52635925 - 52635821
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttca 120  Q
    |||||||||  |||||||||||||| | ||||||| ||||||  ||| | |||||| |||| ||| ||||| |||||||||||||||||| |||||||||    
T  52635925 ttatattgtgcgtatcattgaaaaaaataaatatagtttgttccaatatgaaagtgcaaaacatttattatctatacctataattttaattaaaatttca 52635826  T
Q  121 taaaa 125  Q
    |||||    
T  52635825 taaaa 52635821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 3091872 - 3091976
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    ||||||||||||||||||| |||||| | || |||| ||||||  ||| | |||||| |||||||  ||||| |||||||| |||||||||| |||||||    
T  3091872 gttatattgttggtatcatggaaaaa-ataagtatagtttgttgcaatatgaaagtgcaaaatatcaattatctatacctacaattttaatcgaaatttc 3091970  T
Q  120 ataaaa 125  Q
    ||||||    
T  3091971 ataaaa 3091976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 47806517 - 47806422
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||| ||||||||| | || |||| ||||||| |||   ||||| | ||||||  ||||||||||||||||||||||||||||||    
T  47806517 gttatattgttggtattattgaaaaaaataattatagtttgttacaatacgaaagt-ataaatatctattatttatacctataattttaatcaaaat 47806422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 38490831 - 38490777
Alignment:
Q  71 aaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  38490831 aaagtgcaaaatattaattatctatacctataattttaattaaaatttcataaaa 38490777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 31106223 - 31106318
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||| |||||| ||||||||| ||| | || |||||||| |||||||| |||| || | ||||| ||||||  |||||||||||||||||||||||    
T  31106223 gttattttgttgttatcattgagaaagataagtataatttattataattaaaaa-tgtacaatatccattatcaatacctataattttaatcaaaat 31106318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 16554657 - 16554727
Alignment:
Q  55 aatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcataaaa 125  Q
    ||||||||| ||| | |||||| |||||||  | ||| |||||||||| ||||||||||||||||||||||    
T  16554657 aatttgttacaatatgaaagtgcaaaatatcaaatatctatacctatatttttaatcaaaatttcataaaa 16554727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 645822 - 645733
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaat 110  Q
    |||||||||| |||||||||||||| | | |||||| |||||| ||| | || ||| |||||||  ||||||||||  ||||||||||||    
T  645822 ttatattgtttgtatcattgaaaaaaatatatataacttgttacaatgtgaatgtgtaaaatatctattatttatatttataattttaat 645733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 26877153 - 26877108
Alignment:
Q  71 aaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||    
T  26877153 aaagtgtaaaatatttattatctatacctataattttaatcaaaat 26877108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 4505866 - 4505982
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttca 120  Q
    ||||||||||||| | | ||||||| |  ||| || |||||||  || | ||| ||||||||||  |||||  ||||||||||||||||||||||||| |    
T  4505866 ttatattgttggtgttactgaaaaagatgaatgtagtttgttaccatatgaaaatgaaaaatatcgattatcgatacctataattttaatcaaaatttaa 4505965  T
Q  121 ta-aaactattgtttgt 136  Q
    || |||||| |||||||    
T  4505966 tagaaactactgtttgt 4505982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 35519510 - 35519562
Alignment:
Q  78 aaaatattcattatttatacctataattttaatcaaaatttcataaaactatt 130  Q
    |||||||| | ||| |||| ||||||||||||||||| |||||||||||||||    
T  35519510 aaaatatttactatctatatctataattttaatcaaagtttcataaaactatt 35519562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 37442841 - 37442745
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||| ||||||| ||||||||| | ||||||| ||||||| ||  |||||||  |||| ||  ||||| ||||| ||||||||||| ||||||    
T  37442841 gttatattcttggtataattgaaaaagataaatatagtttgttaaaacataaaagtacaaaaaatatattatctatacttataattttaaacaaaat 37442745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 43028258 - 43028194
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatat 84  Q
    |||| |||||| |||||||||||||| | ||||||| ||||||||||| |||||| | |||||||    
T  43028258 gttacattgttagtatcattgaaaaagataaatatagtttgttataatataaaagcgtaaaatat 43028194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 23971009 - 23970966
Alignment:
Q  78 aaaatattcattatttatacctataattttaatcaaaatttcat 121  Q
    |||||||  ||||| |||||||||||||||||||||||||||||    
T  23971009 aaaatatatattatctatacctataattttaatcaaaatttcat 23970966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 26877592 - 26877547
Alignment:
Q  71 aaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||| |||||||| ||||| |||||||||||||||||| |||||    
T  26877592 aaagtgtaaaatatttattatctatacctataattttaattaaaat 26877547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 39331876 - 39331835
Alignment:
Q  89 tatttatacctataattttaatcaaaatttcataaaactatt 130  Q
    |||||||||||||||||||||| |||||||||| ||| ||||    
T  39331876 tatttatacctataattttaattaaaatttcattaaattatt 39331835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 2684363 - 2684395
Alignment:
Q  93 tatacctataattttaatcaaaatttcataaaa 125  Q
    |||| ||||||||||||||||||||||||||||    
T  2684363 tataactataattttaatcaaaatttcataaaa 2684395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 10214277 - 10214213
Alignment:
Q  52 tataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||| ||||||||||| | |||||| |||||||   |||| ||| ||||||||||||||||||||    
T  10214277 tatagtttgttataatatgaaagtgcaaaatataatttatctatgcctataattttaatcaaaat 10214213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 19546088 - 19546120
Alignment:
Q  93 tatacctataattttaatcaaaatttcataaaa 125  Q
    |||| ||||||||||||||||||||||||||||    
T  19546088 tataactataattttaatcaaaatttcataaaa 19546120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 28513559 - 28513623
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatatt 85  Q
    ||||||||||||| | ||||||||| | || |||||||| ||||||| | |||||| ||||||||    
T  28513559 ttatattgttggtgtgattgaaaaaaataagtataatttattataatatgaaagtgtaaaatatt 28513623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 35519464 - 35519508
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttata 65  Q
    ||||||||||||||||||||||||| | || |||| |||||||||    
T  35519464 ttatattgttggtatcattgaaaaagataagtatagtttgttata 35519508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 39199323 - 39199418
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||||||||||| | || |||||||| ||| ||| |||||| | ||||||| |||||| |||||||||||||||||| |||||    
T  39199323 gttatattgttggtatcattgaaaaa-ataagtataatttattacaatataaaagggcaaaatatccattatatatacctataattttaatgaaaat 39199418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 9007454 - 9007552
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataat-tta--aaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||| |||  |||||  ||| |||| ||||| ||||||||||||||||||||||||    
T  9007454 gttatattgttggtatcattgaaaaa-ataaatataatttgttacaatattatgaaagtacaaagtatttattatctatacctataattttaatcaaaat 9007552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 34151178 - 34151294
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttca 120  Q
    ||||||||||||| ||| ||||||| |  |||||| |||||||  || | ||| ||||||||||  |||||  ||||||||||||||||||||||||| |    
T  34151178 ttatattgttggtgtcactgaaaaagatgaatatagtttgttaccatatgaaaatgaaaaatatcgattatcgatacctataattttaatcaaaatttaa 34151277  T
Q  121 ta-aaactattgtttgt 136  Q
    || ||||||||||||||    
T  34151278 tagaaactattgtttgt 34151294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 45521558 - 45521654
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||||||||||||||||| |||| | || |||| |||| || ||| | |||||| |||||||  ||||| ||||||||||||||||||||||||    
T  45521558 gttatattgttggtatcattggaaaaaataagtatagtttgatacaatgtgaaagtgcaaaatatctattatctatacctataattttaatcaaaat 45521654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 34142931 - 34142840
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatc 111  Q
    |||||||||||||||||||| ||||| | || |||| ||||||| ||| | |||||| |||||||  ||||||||||| |||||||||||||    
T  34142931 gttatattgttggtatcatttaaaaagataagtatagtttgttacaatatgaaagtgtaaaatatctattatttatacatataattttaatc 34142840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 3501395 - 3501294
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    ||||||||||| |||||||||||||| | || ||| ||||||||  || | |||||| |||||||  ||||| |||||||| ||||||| ||||||||||    
T  3501395 gttatattgttagtatcattgaaaaagataagtatgatttgttacgatatgaaagtgcaaaatatatattatctatacctacaattttagtcaaaatttc 3501296  T
Q  120 at 121  Q
    ||    
T  3501295 at 3501294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 10794622 - 10794541
Alignment:
Q  26 ttgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataatttt 107  Q
    |||||||||||||||||||| | || ||||||||||||| || | |||||| |||||||  ||||| |||||||||||||||    
T  10794622 ttgttggtatcattgaaaaagataagtataatttgttattatatgaaagtgcaaaatatctattatctatacctataatttt 10794541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 29773324 - 29773262
Alignment:
Q  54 taatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||| ||| ||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  29773324 taatttcttacaatataaaagtgaaatatatttattatctatacctataattttaatcaaaat 29773262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 37252709 - 37252616
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||| |||||||||||||||||||  | |||||||| ||||||| |||||||  |||||||  |||||  | ||| |||||||||||||||||    
T  37252709 ttatattattggtatcattgaaaaata--agtataatttattataatataaaagtataaaatatatattatcaagacccataattttaatcaaaat 37252616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 1351768 - 1351873
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttc 119  Q
    ||||||||| |||||||||||||||| | || || | ||||||| ||| | ||| || ||| |||  | ||| ||| | |||||||||||||||||||||    
T  1351768 gttatattggtggtatcattgaaaaagataagtacagtttgttacaatatgaaaatgcaaattatctagtatctattcatataattttaatcaaaatttc 1351867  T
Q  120 ataaaa 125  Q
    ||||||    
T  1351868 ataaaa 1351873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 31261307 - 31261214
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaa 113  Q
    |||||||||||  ||||||||||||||| || | || ||| ||  ||| |||||||| |||||||  ||||| ||| |||||||||||||||||    
T  31261307 gttatattgttaatatcattgaaaaatataagtttagtttattgcaatataaaagtgcaaaatatatattatctatgcctataattttaatcaa 31261214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 45413903 - 45413999
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaattt 118  Q
    ||||||||||| ||||||| ||||| | || |||||||| ||||||| ||||||| ||||||||| ||| | ||||| |||  |||||||||| ||||    
T  45413903 ttatattgttgttatcatt-aaaaaaaaaagtataatttattataatataaaagtaaaaaatatttattgtctatacttatgtttttaatcaatattt 45413999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 44148575 - 44148520
Alignment:
Q  79 aaatattcattatttatacctataattttaatcaaaatttcataaaactattgttt 134  Q
    ||||||| |||| ||||||||||||||| ||||||||||| ||||||  |||||||    
T  44148575 aaatatttattacttatacctataatttgaatcaaaattttataaaatcattgttt 44148520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 24314166 - 24314260
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatt 117  Q
    ||||||||||||||||||||||||||   ||||||| ||| ||| ||  | |||||| || ||||  ||||| ||||||||||| |||||||||||||    
T  24314166 gttatattgttggtatcattgaaaaagttaaatatagttttttacaaaatgaaagtgcaatatat--attatctatacctataa-tttaatcaaaatt 24314260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 34968380 - 34968303
Alignment:
Q  37 attgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaa 114  Q
    ||||||||| | || |||| ||||||| ||| | |||||| |||||||  ||||| ||||| ||||||||||||||||    
T  34968380 attgaaaaagataactatagtttgttacaatatgaaagtgtaaaatatctattatctatacatataattttaatcaaa 34968303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 6629218 - 6629282
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatat 84  Q
    |||||||||||||| |||||||| || | ||||||||||| ||| ||| | ||||||||| ||||    
T  6629218 gttatattgttggtgtcattgaataagataaatataatttattacaatatgaaagtgaaacatat 6629282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 36068518 - 36068582
Alignment:
Q  57 tttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttcat 121  Q
    ||||||| ||| |||||||  |||||||  | ||| ||||||||||||||||||||| |||||||    
T  36068518 tttgttacaatataaaagtacaaaatatctactatctatacctataattttaatcaatatttcat 36068582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 14690952 - 14690860
Alignment:
Q  22 tatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaa 114  Q
    ||||||||||||| |||||||||| | |  |||||||| ||| ||| |||||||| ||||||| |||||| ||||||||||||||||| ||||    
T  14690952 tatattgttggtaacattgaaaaagataggtataatttattacaatataaaagtgtaaaatatccattatatatacctataattttaaccaaa 14690860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 9155455 - 9155361
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaattt 118  Q
    ||||||| ||||||||||||||||||     |||||||| ||| ||| |||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  9155455 ttatattattggtatcattgaaaaatgt---tataattttttacaatataaaagtgcacaatatttattatctatacctataattttaatcaaaattt 9155361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 32279584 - 32279492
Alignment:
Q  24 tattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||  ||||||||||||| | ||||||| |||| || ||| |||||||  |||||||  ||||| ||||| ||||||||||||||||||    
T  32279584 tattgttaatatcattgaaaaagataaatatagtttgctagaatataaaagtacaaaatatctattatctatacttataattttaatcaaaat 32279492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 29729155 - 29729052
Alignment:
Q  21 ttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatttca 120  Q
    ||||||| ||| |||||| |||||| | ||||||| ||||||  ||| | |||||| |||||||  | ||| ||||||| ||||||||||||| ||||||    
T  29729155 ttatatttttgatatcatagaaaaaaataaatatagtttgttgcaatatgaaagtgtaaaatatgtaatatatatacctttaattttaatcaacatttca 29729056  T
Q  121 taaa 124  Q
    ||||    
T  29729055 taaa 29729052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 3842091 - 3842027
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatat 84  Q
    |||||| |||| || ||||||||||||| || |||||||||||||||| | |||||| |||||||    
T  3842091 gttatagtgtttgtgtcattgaaaaatataagtataatttgttataatatgaaagtgcaaaatat 3842027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Original strand, 12808556 - 12808586
Alignment:
Q  95 tacctataattttaatcaaaatttcataaaa 125  Q
    |||||||||||||||||||||||||||||||    
T  12808556 tacctataattttaatcaaaatttcataaaa 12808586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 65616 - 65680
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatat 84  Q
    |||||||||||||||||||||||||| | ||||||| ||||||| ||| | ||||||||||||||    
T  65616 gttatattgttggtatcattgaaaaagataaatatagtttgttacaatatgaaagtgaaaaatat 65680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 47411117 - 47411213
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||| |||||| ||||||||||||||| || ||||||||| || ||| | ||| |  |||||||  ||||| ||||||||||||||||||||||||    
T  47411117 gttatgttgttgatatcattgaaaaatataagtataatttgctacaatatgaaaatacaaaatatatattatctatacctataattttaatcaaaat 47411213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 47410490 - 47410394
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaatt 117  Q
    ||||||||||| |||||||||||||| | |  |||| |||| || ||| | || ||| |||||||  |||||||||||||||||||||||||||||||    
T  47410490 gttatattgtttgtatcattgaaaaagataggtatagtttgatacaatatgaa-gtgcaaaatatctattatttatacctataattttaatcaaaatt 47410394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 40940686 - 40940765
Alignment:
Q  37 attgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||||||||| || | || ||||||| ||| |||||||| |||||||  ||||| ||||||||||||||||||| ||||    
T  40940686 attgaaaaatataagtgtagtttgttacaatgtaaaagtgcaaaatatatattatctatacctataattttaatccaaat 40940765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 21594465 - 21594371
Alignment:
Q  22 tatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    ||||| |||||||||| ||||||| | ||||||| ||||||||||| | |||||| | |||||  ||||| ||  ||||||| ||||||||||||    
T  21594465 tatatagttggtatcactgaaaaagataaatatagtttgttataatatgaaagtgtagaatatctattatctaggcctataactttaatcaaaat 21594371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 38374123 - 38374091
Alignment:
Q  101 taattttaatcaaaatttcataaaactattgtt 133  Q
    |||||||||||||||||||||||||||||||||    
T  38374123 taattttaatcaaaatttcataaaactattgtt 38374091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 38374193 - 38374129
Alignment:
Q  52 tataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||| ||||||| ||| ||||||||||||||||  ||||| |||||| || ||||||||||||||    
T  38374193 tatagtttgttacaatataaaagtgaaaaatatctattatgtataccaattattttaatcaaaat 38374129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 39199139 - 39199043
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||||| | ||||| | || |||| ||||| | ||| | |||||| ||||| |  || || ||||||||||||||||||||||||    
T  39199139 gttatattgttggtatcaataaaaaagataattatagtttgtcacaatatgaaagtgcaaaatgtcaataatctatacctataattttaatcaaaat 39199043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 51283736 - 51283779
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgtta 63  Q
    |||||||||||||||||||||||||| | || ||||||||||||    
T  51283736 gttatattgttggtatcattgaaaaagataagtataatttgtta 51283779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 51284099 - 51284137
Alignment:
Q  87 attatttatacctataattttaatcaaaatttcataaaa 125  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  51284099 attatttatatctataattttaataaaaatttcataaaa 51284137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 16738291 - 16738335
Alignment:
Q  19 agttatattgttggtatcattgaaaaatagaaatataatttgtta 63  Q
    ||||||||||||||| || |||||||| | |||||||||||||||    
T  16738291 agttatattgttggtttctttgaaaaagataaatataatttgtta 16738335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 32758243 - 32758211
Alignment:
Q  93 tatacctataattttaatcaaaatttcataaaa 125  Q
    ||||| |||||||||||||||||||||||||||    
T  32758243 tatacatataattttaatcaaaatttcataaaa 32758211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 35965476 - 35965572
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||| ||||||||||||| |  ||| || ||||||| ||  | ||||||||||||||  ||||| || |  |||| |||||||||||||    
T  35965476 gttatattgttgatatcattgaaaaagattaatgtagtttgttacaacatgaaagtgaaaaatatctattatctaaatatatagttttaatcaaaat 35965572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 10700 - 10604
Alignment:
Q  20 gttatattgttggtatcattgaaaaatagaaatataatttgttataatttaaaagtgaaaaatattcattatttatacctataattttaatcaaaat 116  Q
    |||||||||||||||| | ||||||| | ||||||| ||||||| ||| | |||||| |||| ||  |||||  || | ||||||||||||||||||    
T  10700 gttatattgttggtattagtgaaaaagataaatatagtttgttacaatatgaaagtgcaaaagatctattatacatgcttataattttaatcaaaat 10604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 125
Target Start/End: Original strand, 351006 - 351037
Alignment:
Q  94 atacctataattttaatcaaaatttcataaaa 125  Q
    ||||||||||||||||||||||||||||||||    
T  351006 atacctataattttaatcaaaatttcataaaa 351037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University