View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15717_high_2 (Length: 597)
Name: NF15717_high_2
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15717_high_2 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Original strand, 31770294 - 31770868
Alignment:
| Q |
17 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31770294 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaag |
31770393 |
T |
|
| Q |
117 |
ataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaactaatgcaaagtattcaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
31770394 |
ataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagtgagtacctaaaactgatgcaaaatattcaat |
31770493 |
T |
|
| Q |
217 |
ctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactctagaaagttattcagaaatta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31770494 |
ctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactctagaaagttattcagaaatta |
31770593 |
T |
|
| Q |
317 |
aaatcct-nnnnnnnnnnnnncaacgcaataccaaaaacatcaaggttccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaa |
415 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31770594 |
aaatcctaaaaataaaaaaaacaacgcaataccaaaaacatcaaggttccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaa |
31770693 |
T |
|
| Q |
416 |
gaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnnnnnnnnnnnnnncaacatcaggaagatatacagtacagaaataacagcaacnn |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31770694 |
gaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaaaaccaaaaaaacaacatcaggaagatatacagtacagaaattacagcaacaa |
31770793 |
T |
|
| Q |
516 |
nnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgatgatgt |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31770794 |
aaaaatgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgaagatgt |
31770868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 7607734 - 7607899
Alignment:
| Q |
17 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7607734 |
agaatctattttgatagaaccatctagtaagataaattatgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaag |
7607833 |
T |
|
| Q |
117 |
ataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagag |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7607834 |
ataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagag |
7607899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 14185058 - 14184934
Alignment:
| Q |
17 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14185058 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaag |
14184959 |
T |
|
| Q |
117 |
ataaagtggtggtagagatttctaa |
141 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14184958 |
ataaagtggtggtagagatttctaa |
14184934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 98 - 590
Target Start/End: Complemental strand, 41810939 - 41810447
Alignment:
| Q |
98 |
agaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41810939 |
agaaaaatgttttgcaaagataaagtggtgttagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagtgagtacctaaaa |
41810840 |
T |
|
| Q |
198 |
ctaatgcaaagtattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactcta |
297 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41810839 |
ctgatgcaaaatattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactcta |
41810740 |
T |
|
| Q |
298 |
gaaagttattcagaaattaaaatcctnnnnnnnnnnnnncaacgcaataccaaaaacatcaaggttccaccgttacgaagacttcaatggcaacgaaatc |
397 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41810739 |
gaaagttattcagaaattaaaatcctaaaaataaaaaaacaacgcaataccaaaaacatcaaggttccaccgttacgaagacttcaatggcaacgaaatc |
41810640 |
T |
|
| Q |
398 |
ggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnnnnnnnnnnnnnncaacatcaggaagatatacagta |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41810639 |
ggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaaaaccaaaaaaacaacatcaggaagatatacagta |
41810540 |
T |
|
| Q |
498 |
cagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgatgatgt |
590 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41810539 |
cagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtagtaaagcaatatatctacaatacttctcatttgaagatgt |
41810447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 28733 - 28298
Alignment:
| Q |
17 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaag |
116 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28733 |
agaatccattttgatagaaccatcaagtaagatagattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaa-tgttttgcaaag |
28635 |
T |
|
| Q |
117 |
ataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaactaatgcaaagtattcaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||| ||||| || |
|
|
| T |
28634 |
ataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagggagtacctaaaactgatacaaaatattccat |
28535 |
T |
|
| Q |
217 |
ctgaaccatcgtactccaatcctcaca--------ctctgatacttacaatttcaccgaattccaattg-aatatcaccaatttactctagaaagttatt |
307 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||| ||||| ||||||| ||| |||||||||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
28534 |
ctgaaccat-gtactccaatccttacactccgaatctccgatacatacaattacacagaattccaattgaaatatcaccaatttactttagaaagctatc |
28436 |
T |
|
| Q |
308 |
cagaaattaaaatcctnnnnnnnnnnnnncaacgcaataccaaaaacatcaaggttccaccgttacgaagacttcaatggcaacgaaatcggaaaagttc |
407 |
Q |
| |
|
|||||||||||||| ||||||||| || |||| |||||| ||| || |||||||| | ||| | ||||| ||||||||||||| | |
|
|
| T |
28435 |
atgaaattaaaatcctaaaaaaaaaaaaacaacgcaatgcccaaaatatcaagattctacagttacgaaaatttcgtttgcaacaaaatcggaaaagtgc |
28336 |
T |
|
| Q |
408 |
aatgcgaagaagaaatggatggagcgaaccttgtatcgaag |
448 |
Q |
| |
|
||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
28335 |
aatgc---aacgaaatggatggagcgaaccttaaatcgaag |
28298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 12537849 - 12538162
Alignment:
| Q |
17 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaag |
116 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12537849 |
agaatccattttgatagaaccatcaagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaa-aaaaatgttttgcaaag |
12537947 |
T |
|
| Q |
117 |
ataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaactaatgcaaagtattcaat |
216 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||| ||||| || |
|
|
| T |
12537948 |
ataaagttgtggtggagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagatggagtacctaaaactgatacaaaatattccat |
12538047 |
T |
|
| Q |
217 |
ctgaaccatcgtactccaatcctcaca--------ctctgatacttacaatttcaccgaattccaattg-aatatcaccaatttactctagaaagttatt |
307 |
Q |
| |
|
|| |||||| ||||||||||||| ||| ||| |||||||||||||||||||| || |||||| |||||||||| |||||| ||||||| ||| |
|
|
| T |
12538048 |
ctaaaccat-gtactccaatccttacactccgaatctccgatacttacaatttcaccgatttacaattgaaatatcaccagtttactttagaaagctatc |
12538146 |
T |
|
| Q |
308 |
cagaaattaaaatcct |
323 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12538147 |
atgaaattaaaatcct |
12538162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 31 - 243
Target Start/End: Complemental strand, 12870830 - 12870619
Alignment:
| Q |
31 |
tagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaagataaagtggtggta |
130 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||| ||| | | |||||||||||||||||||||||| |||| ||| |||||||| ||||||| |||||| |
|
|
| T |
12870830 |
tagaaccaccgagtaagataaattatgacctaacagataaagaattgaagattcaattgagagaaaa-gaaagatgatttgcaaatataaagtagtggta |
12870732 |
T |
|
| Q |
131 |
gagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagagagtgagtacctaaaactaatgcaaagtattcaatctgaaccatcgtac |
230 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||| | || ||| |||| ||| ||| ||||||| |
|
|
| T |
12870731 |
gagatttctaaaccctaacaaattgatagaaattagagaaaaatagtgagagaaggggtacctaaaattgattcaagaaattccatcccaacaatcgtac |
12870632 |
T |
|
| Q |
231 |
tccaatcctcaca |
243 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12870631 |
tccaatcctcaca |
12870619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 387 - 448
Target Start/End: Original strand, 16253096 - 16253157
Alignment:
| Q |
387 |
gcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaag |
448 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
16253096 |
gcaacgaaatcggaaaagtgcaatgcggtgaagaaatggatggagcgaaccttgaatcgaag |
16253157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 27765998 - 27765782
Alignment:
| Q |
27 |
ttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaagataaagtggt |
126 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||| ||| || | |||||||||||||||||||||||| |||| ||| |||||||| ||||||| || |
|
|
| T |
27765998 |
ttgatagaaccaccgagtaagataaattatgacctaacagatgaagaattgaagattcaattgagagaaaa-gaaagatgatttgcaaatataaagtagt |
27765900 |
T |
|
| Q |
127 |
ggtagagatttctaaaccttaacaaattgatagaaattagagaaaagtagtgagag-agtgagtacctaaaactaatgcaaagtattcaatctgaaccat |
225 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || | |||||||||| | || ||| |||| ||| |||||| |
|
|
| T |
27765899 |
agtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccat |
27765800 |
T |
|
| Q |
226 |
cgtactccaatcctcaca |
243 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
27765799 |
cgtacttcaatcctcaca |
27765782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 32280000 - 32279926
Alignment:
| Q |
17 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgag |
91 |
Q |
| |
|
|||||| | |||||||||||||| ||||||| ||||| ||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
32280000 |
agaatccaatttgatagaaccattgagtaagaaaaattatgacctaatagaagaggaatttaaaattcaattgag |
32279926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 6666712 - 6666779
Alignment:
| Q |
101 |
aaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagag |
168 |
Q |
| |
|
|||||| || ||||||||||| |||| |||||||||| |||||| ||| |||||||||||||| |||| |
|
|
| T |
6666712 |
aaaatggttggcaaagataaattggtagtagagatttgtaaaccctaataaattgatagaaatgagag |
6666779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 35948 - 36022
Alignment:
| Q |
17 |
agaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgag |
91 |
Q |
| |
|
|||||| | |||||||||| ||| ||||||| ||||| ||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
35948 |
agaatccaatttgatagaaacattgagtaagaaaaattatgacctaatagaagaggaattcaaaattcaattgag |
36022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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