View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15717_high_4 (Length: 406)

Name: NF15717_high_4
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15717_high_4
NF15717_high_4
[»] chr8 (6 HSPs)
chr8 (105-397)||(34609496-34609769)
chr8 (312-384)||(8867681-8867755)
chr8 (312-385)||(18890867-18890942)
chr8 (312-385)||(25191228-25191303)
chr8 (312-385)||(37971144-37971220)
chr8 (312-381)||(28897563-28897635)
[»] chr3 (13 HSPs)
chr3 (318-364)||(45425453-45425499)
chr3 (312-385)||(33579718-33579793)
chr3 (312-385)||(16235269-16235343)
chr3 (318-385)||(3785709-3785777)
chr3 (312-381)||(40487175-40487246)
chr3 (312-385)||(21289984-21290058)
chr3 (312-388)||(29921903-29921981)
chr3 (312-388)||(29971056-29971134)
chr3 (318-364)||(45424673-45424719)
chr3 (312-381)||(6954863-6954935)
chr3 (312-381)||(10232920-10232992)
chr3 (354-389)||(7887568-7887604)
chr3 (312-380)||(45568612-45568683)
[»] scaffold0884 (1 HSPs)
scaffold0884 (312-386)||(2133-2211)
[»] chr7 (2 HSPs)
chr7 (312-385)||(9450300-9450376)
chr7 (312-381)||(37837626-37837697)
[»] chr1 (5 HSPs)
chr1 (312-388)||(34528572-34528648)
chr1 (312-371)||(34878450-34878510)
chr1 (312-381)||(15435040-15435111)
chr1 (312-371)||(45415412-45415473)
chr1 (312-371)||(21686726-21686785)
[»] chr6 (4 HSPs)
chr6 (353-397)||(31225985-31226029)
chr6 (323-388)||(28981040-28981106)
chr6 (312-381)||(12170346-12170418)
chr6 (318-388)||(30493390-30493459)
[»] chr2 (7 HSPs)
chr2 (313-381)||(4098964-4099035)
chr2 (312-385)||(1415425-1415500)
chr2 (312-385)||(10237377-10237452)
chr2 (312-381)||(18763328-18763399)
chr2 (312-388)||(12648085-12648163)
chr2 (312-388)||(14955383-14955461)
chr2 (312-388)||(24461299-24461375)
[»] scaffold0603 (1 HSPs)
scaffold0603 (312-371)||(7567-7626)
[»] chr5 (3 HSPs)
chr5 (312-385)||(14211082-14211155)
chr5 (312-381)||(7036077-7036149)
chr5 (312-381)||(34945271-34945343)
[»] chr4 (7 HSPs)
chr4 (312-386)||(4142916-4142993)
chr4 (321-388)||(28857258-28857327)
chr4 (312-381)||(43510069-43510141)
chr4 (322-388)||(9713788-9713856)
chr4 (312-394)||(35348176-35348260)
chr4 (312-385)||(36161584-36161657)
chr4 (323-385)||(52944193-52944257)
[»] scaffold0127 (1 HSPs)
scaffold0127 (312-390)||(15342-15422)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 105 - 397
Target Start/End: Original strand, 34609496 - 34609769
Alignment:
Q  105 gataagctatttacttgatatacnnnnnnncattatcgtgacaaattactatttttatctaacaataaatgtgtttgaaattgtttaatttagtatgt-- 202  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34609496 gataagctatttacttgatatactttttttcattatcgtgacaaattactatttttatctaacaataaatgtgtttgaaattgtttaatttagtatgtgt 34609595  T
Q  203 aacaatatcatgtacttagctctcnnnnnnntatcatgtacttagctttttattcgcattctctgtaagtttttctctcttttaccatcgaggatggatg 302  Q
    |||||||||||                     ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| || ||    
T  34609596 aacaatatcat---------------------atcatgtacttagttttttattcgcattctcggtaagtttttttctcttttaccatcgaggaggggtg 34609674  T
Q  303 attttagccttttaagtcattttttgatctagaatcactcatctatatcatttttccctttctttcaatcaaataagtgatttccataaataaag 397  Q
    |||||||||||||||||  | |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34609675 attttagccttttaagttctcttttgatctagaatcactcatctgcatcattcttccctttctttcaatcaaataagtgatttccataaataaag 34609769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 384
Target Start/End: Original strand, 8867681 - 8867755
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatt-tttccctttctttcaatc-aaataagtgatt 384  Q
    ||||||||||||||||||||||||||||  |||| | ||| || |||||||||||||||||| ||||||||||||    
T  8867681 ttttaagtcattttttgatctagaatcagccatcaacatctttgtttccctttctttcaatctaaataagtgatt 8867755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 18890942 - 18890867
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcattttt-ccctttctttcaatc-aaataagtgattt 385  Q
    ||||| |||| ||||||| ||||||||||||||||  ||| ||||| ||||||||||||||| |||||||||||||    
T  18890942 ttttaggtcaatttttgacctagaatcactcatctgcatcttttttcccctttctttcaatctaaataagtgattt 18890867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 25191303 - 25191228
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttc-aatcaaataagtgattt 385  Q
    ||||| |||||||||||| |||||||||| |||||| ||| |||||||| |||||||| ||| |||||||||||||    
T  25191303 ttttaggtcattttttgacctagaatcacccatctacatcttttttcccttttctttcaaattaaataagtgattt 25191228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 37971144 - 37971220
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagtgattt 385  Q
    ||||| |||||||||||| |||||||||| | |||| ||| ||||||||  |||||||||||| |||||||||||||    
T  37971144 ttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtgattt 37971220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 28897563 - 28897635
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttc--cctttctttcaatc-aaataagtg 381  Q
    |||||||||||||||||||||| |||||| | |||| ||| ||||||  | |||||||||||| |||||||||    
T  28897563 ttttaagtcattttttgatctaaaatcacccctctacatcttttttcctcttttctttcaatctaaataagtg 28897635  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 45425453 - 45425499
Alignment:
Q  318 gtcattttttgatctagaatcactcatctatatcatttttccctttc 364  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  45425453 gtcattttttgatctagaatcacccatctatatcttttttccctttc 45425499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 33579718 - 33579793
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttcc-ctttctttcaatc-aaataagtgattt 385  Q
    |||||||||||||||||| |||||||||| | |||| ||| |||||||  |||||||||||| |||||||||||||    
T  33579718 ttttaagtcattttttgacctagaatcacccctctacatcttttttccattttctttcaatctaaataagtgattt 33579793  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 16235269 - 16235343
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccctttctttcaatc-aaataagtgattt 385  Q
    ||||| |||| ||||||| ||||||||||||||||  ||| ||||||| ||| |||||||| |||||||||||||    
T  16235269 ttttaggtcaatttttgacctagaatcactcatctgcatcttttttccttttttttcaatctaaataagtgattt 16235343  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 3785709 - 3785777
Alignment:
Q  318 gtcattttttgatctagaatcactcatctatatcatttttccctttctttcaa-tcaaataagtgattt 385  Q
    ||||||||||||  ||||||||| |||||  ||| ||||||| |||||||||| |||||||||||||||    
T  3785709 gtcattttttgacttagaatcacacatctgcatcttttttccgtttctttcaattcaaataagtgattt 3785777  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 40487175 - 40487246
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| |||||||||||| |||| ||| |||| ||| |||||||||||| |||||||||    
T  40487175 ttttaggtcattttttgacctagaatcactcttctacatctttttccccttttctttcaatctaaataagtg 40487246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 21290058 - 21289984
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccctttctttcaat-caaataagtgattt 385  Q
    ||||| |||| ||||||| |||||||||| | |||  ||| |||||||| |||||||||| ||||||||||||||    
T  21290058 ttttaggtcaatttttgacctagaatcacccctctgcatcttttttccccttctttcaatccaaataagtgattt 21289984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 29921903 - 29921981
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcattttt-ccctttctttcaatc-aaataagtgatttcca 388  Q
    ||||| |||||||||||| ||| |||||||  |||  ||| ||||| ||||||||||||||| ||||||||||||||||    
T  29921903 ttttaggtcattttttgagctaaaatcacttctctccatcttttttcccctttctttcaatctaaataagtgatttcca 29921981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 29971056 - 29971134
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcattttt-ccctttctttcaatc-aaataagtgatttcca 388  Q
    ||||| |||||||||||| ||| |||||||  |||  ||| ||||| ||||||||||||||| ||||||||||||||||    
T  29971056 ttttaggtcattttttgagctaaaatcacttctctccatcttttttcccctttctttcaatctaaataagtgatttcca 29971134  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 45424673 - 45424719
Alignment:
Q  318 gtcattttttgatctagaatcactcatctatatcatttttccctttc 364  Q
    |||||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  45424673 gtcattctttgacctagaatcactcatctacatcttttttccctttc 45424719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 6954935 - 6954863
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| |||||||||| | |||| ||| ||||||||  |||||||||||| |||||||||    
T  6954935 ttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtg 6954863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 10232920 - 10232992
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| |||||||||| | |||| ||| ||||||||  |||||||||||| |||||||||    
T  10232920 ttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtg 10232992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 389
Target Start/End: Complemental strand, 7887604 - 7887568
Alignment:
Q  354 ttttccctttctttcaatc-aaataagtgatttccat 389  Q
    ||||||||||||||||||| |||||||||||||||||    
T  7887604 ttttccctttctttcaatctaaataagtgatttccat 7887568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 45568683 - 45568612
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagt 380  Q
    ||||| |||||||||||||||||||| |  |||||| ||| ||||||||  |||||||||||| ||||||||    
T  45568683 ttttaggtcattttttgatctagaataatccatctacatcttttttccccttttctttcaatctaaataagt 45568612  T

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Target: scaffold0884 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 2211 - 2133
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc---tttctttcaatc-aaataagtgatttc 386  Q
    ||||||||||||||||||||||||||||| | |||| ||| ||||||||   |||||||||||| ||||||||| ||||    
T  2211 ttttaagtcattttttgatctagaatcacccctctacatcttttttcccctttttctttcaatctaaataagtggtttc 2133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 9450376 - 9450300
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagtgattt 385  Q
    ||||| |||||||||||| |||||||||| |||||| ||| | ||||||  |||||||||||| |||||||||||||    
T  9450376 ttttaggtcattttttgacctagaatcacccatctacatcttgtttccccttttctttcaatctaaataagtgattt 9450300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 37837697 - 37837626
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| |||||||||| | |||| ||| |||||||| |||||||||||| |||||||||    
T  37837697 ttttaggtcattttttgacctagaatcacccctctacatcttttttcccttttctttcaatctaaataagtg 37837626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 34528572 - 34528648
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccctttctttcaatc-aaataagtgatttcca 388  Q
    ||||| |||||||||||| |||||||||| | |||  ||| |||||||||||||||| ||| ||||||||||||||||    
T  34528572 ttttatgtcattttttgacctagaatcacccctctgcatc-tttttccctttctttcgatctaaataagtgatttcca 34528648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 34878510 - 34878450
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttcc-ctttctttcaat 371  Q
    ||||| |||||||||||| ||||||||||||||||| ||| |||||||  |||||||||||    
T  34878510 ttttaggtcattttttgacctagaatcactcatctacatcttttttccattttctttcaat 34878450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 15435111 - 15435040
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtg 381  Q
    ||||| ||||||||||||||||||||||  | |||| ||| |||||||| |||||||||||| |||||||||    
T  15435111 ttttaggtcattttttgatctagaatcaaccctctacatcttttttcccttttctttcaatctaaataagtg 15435040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 45415412 - 45415473
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaat 371  Q
    ||||| ||||||||||||||||||||||| | |||| ||| ||||||||  |||||||||||    
T  45415412 ttttaggtcattttttgatctagaatcacccctctacatcttttttccccttttctttcaat 45415473  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 21686726 - 21686785
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttcc-ctttctttcaat 371  Q
    ||||| ||||||||||||||||||||||||| |||| ||| |||||||  |||||||||||    
T  21686726 ttttaggtcattttttgatctagaatcactc-tctacatcttttttccattttctttcaat 21686785  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 31225985 - 31226029
Alignment:
Q  353 tttttccctttctttcaatcaaataagtgatttccataaataaag 397  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||    
T  31225985 tttttctctttctttcaatcaaataagtgatttccacatataaag 31226029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 28981040 - 28981106
Alignment:
Q  323 tttttgatctagaatcactcatctatatcatttttccctttctttcaatc-aaataagtgatttcca 388  Q
    ||||||| ||||||| | || ||  |||| |||||||||||||||||||| ||||||||||||||||    
T  28981040 tttttgacctagaattattcttccgtatcttttttccctttctttcaatctaaataagtgatttcca 28981106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 12170346 - 12170418
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| |||||||||| | |||| ||| ||||||||  |||||||||||| |||||||||    
T  12170346 ttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtg 12170418  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 30493390 - 30493459
Alignment:
Q  318 gtcattttttgatctagaatcactcatctatatcatttttccctttctttcaatc-aaataagtgatttcca 388  Q
    |||||||||||| |||||||||| ||  |  ||| |||||||||||||||||| | ||||||||||||||||    
T  30493390 gtcattttttgacctagaatcaccca--tgcatcttttttccctttctttcaaactaaataagtgatttcca 30493459  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 4098964 - 4099035
Alignment:
Q  313 tttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagtg 381  Q
    |||| |||||||||||| |||||||||| |||||| ||| ||||||||  |||||||||||| |||||||||    
T  4098964 tttaggtcattttttgacctagaatcacccatctacatcttttttccccttttctttcaatctaaataagtg 4099035  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 1415425 - 1415500
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaa-tcaaataagtgattt 385  Q
    ||||| || |||||||||||||||||||| | |||| ||| |||||||| |||||||||| | |||||||||||||    
T  1415425 ttttaggttattttttgatctagaatcacccctctacatcttttttcccttttctttcaatttaaataagtgattt 1415500  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 10237452 - 10237377
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtgattt 385  Q
    ||||| |||| ||||||| |||||||||| | |||| ||| |||||||| |||||||||||| |||||||||||||    
T  10237452 ttttaggtcaatttttgacctagaatcacccctctacatcttttttcccctttctttcaatctaaataagtgattt 10237377  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 18763328 - 18763399
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| |||||||||| | |||| ||| |||||||| |||||||||||| |||||||||    
T  18763328 ttttatgtcattttttgacctagaatcacccctctacatcttttttcccttttctttcaatctaaataagtg 18763399  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 12648163 - 12648085
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttc-cctttctttcaatc-aaataagtgatttcca 388  Q
    ||||| |||||||||||| |||||||||| | || | ||| |||||| | |||||||||||| ||||||||||||||||    
T  12648163 ttttaggtcattttttgacctagaatcacccctccacatcttttttctcttttctttcaatctaaataagtgatttcca 12648085  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 14955383 - 14955461
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttcc-ctttctttcaatc-aaataagtgatttcca 388  Q
    |||||||||| ||||||| |||||||||  | |||  ||| ||||||| ||||||||||||| ||||||||||||||||    
T  14955383 ttttaagtcaatttttgacctagaatcatccctctgcatcttttttcctctttctttcaatctaaataagtgatttcca 14955461  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 24461299 - 24461375
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccctttctttcaatc-aaataagtgatttcca 388  Q
    ||||| |||||||||||| |||||||||||| |||  |||  ||||| |||| |||||||| ||||||||||||||||    
T  24461299 ttttaggtcattttttgacctagaatcactcctctgcatccgttttctcttt-tttcaatctaaataagtgatttcca 24461375  T

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Target: scaffold0603 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 7567 - 7626
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccctttctttcaat 371  Q
    ||||| |||||||||||| ||||||||||||||||  ||| |||  ||||||||||||||    
T  7567 ttttaggtcattttttgacctagaatcactcatctgcatcttttacccctttctttcaat 7626  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 14211082 - 14211155
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccctttctttcaatc-aaataagtgattt 385  Q
    ||||| |||| ||||||| |||||||||| | |||  ||| |||||||||||||||||||| |||||||||||||    
T  14211082 ttttaggtcaatttttgacctagaatcacccctctgcatc-tttttccctttctttcaatctaaataagtgattt 14211155  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 7036077 - 7036149
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttc--cctttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| ||| ||||||||||||| ||| ||||||  | |||||||||||| |||||||||    
T  7036077 ttttaggtcattttttgacctaaaatcactcatctacatcttttttcctcttttctttcaatctaaataagtg 7036149  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 34945271 - 34945343
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| |||||||||| | |||| ||| ||||||||  |||||||||||| |||||||||    
T  34945271 ttttaggtcattttttgacctagaatcacccttctacatcttttttccccttttctttcaatctaaataagtg 34945343  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 4142993 - 4142916
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc--tttctttcaatc-aaataagtgatttc 386  Q
    ||||| |||||||||||| |||||||||| | |||| ||| ||||||||  |||||||||||| ||||||||| ||||    
T  4142993 ttttaggtcattttttgacctagaatcacccctctacatcttttttccccttttctttcaatctaaataagtgttttc 4142916  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 28857258 - 28857327
Alignment:
Q  321 attttttgatctagaatcactcatctatatcatttttccctttc-tttcaatc-aaataagtgatttcca 388  Q
    ||||||||| ||| |||||| ||||| |||| |||||| ||||| |||||||| ||||||||||||||||    
T  28857258 attttttgacctataatcacccatctgtatcctttttctctttcctttcaatccaaataagtgatttcca 28857327  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 43510069 - 43510141
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcattttt--ccctttctttcaatc-aaataagtg 381  Q
    ||||| |||||||||||| |||||||||||| |||| ||| |||||  || |||||||||||| |||||||||    
T  43510069 ttttaggtcattttttgacctagaatcactcctctacatctttttttcccttttctttcaatctaaataagtg 43510141  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 9713788 - 9713856
Alignment:
Q  322 ttttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtgatttcca 388  Q
    |||||| | |||||||||||  |||| ||| |||||||| |||||||||||| ||||||||||||||||    
T  9713788 tttttttacctagaatcacttctctacatcttttttcccctttctttcaatctaaataagtgatttcca 9713856  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 394
Target Start/End: Original strand, 35348176 - 35348260
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtgatttccataaata 394  Q
    ||||| |||||||||||| ||||||||||   |||| ||| |||||||| |||||||||||| ||||||||| ||| || |||||    
T  35348176 ttttaggtcattttttgacctagaatcacctctctacatcttttttcccttttctttcaatctaaataagtggttttcacaaata 35348260  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 36161584 - 36161657
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtgattt 385  Q
    ||||| |||||||||||| |||||||||| |||||  ||  |||||||| |||||||||||| |||||||||||||    
T  36161584 ttttaggtcattttttgacctagaatcacccatctgcat--tttttcccatttctttcaatctaaataagtgattt 36161657  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 52944193 - 52944257
Alignment:
Q  323 tttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtgattt 385  Q
    ||||||||||| |||||  | ||| ||||||||||||| |||||||||||| |||||||||||||    
T  52944193 tttttgatctaaaatcatccctctgtatcatttttcccttttctttcaatctaaataagtgattt 52944257  T

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Target: scaffold0127 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 15342 - 15422
Alignment:
Q  312 ttttaagtcattttttgatctagaatcactcatctatatcatttttccc-tttctttcaatc-aaataagtgatttccata 390  Q
    ||||| |||||||||||| |||||||||| | |||| ||| |||| ||| |||||||||||| ||||||||| ||| ||||    
T  15342 ttttaggtcattttttgacctagaatcacccctctacatctttttccccttttctttcaatctaaataagtggttttcata 15422  T

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