View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15717_high_5 (Length: 358)
Name: NF15717_high_5
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15717_high_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 4493894 - 4494232
Alignment:
| Q |
20 |
gatcgtaccagcgaagttatgttctttgtttggtagataagaaatcaaaataaatgaaatttttggttttcttcaagcttatgtgatattagaagcaatt |
119 |
Q |
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| T |
4493894 |
gatcgtaccagcgaagttatgttctttgtttggtagataagaaatcaaaataaatgaaacttttggttttcttcaagcttatgtgatattagaagcaatt |
4493993 |
T |
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| Q |
120 |
aaaaactaccatatagttaatttgttcacctcatgttttaattttatcctaatttggtttcaattcacnnnnnnnnnnnnncagaacaaggagaagcaaa |
219 |
Q |
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| T |
4493994 |
aaaaactaccatatagttaatttgttcacctcatgttttaattttctcctaatttggtttcaattcacttatttgttttttcagaacaaggagaagcaaa |
4494093 |
T |
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| Q |
220 |
aatggatagtaatttaagtagaagtataagtagaagcttgagtaggtcaagttggaaaatggaagaagtgtttgctagtggaagatattcaagaagaact |
319 |
Q |
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| T |
4494094 |
aatggatagtaatttaagtagaagtataagtagaagcttgagtaggtcaagttggaaaatggaagaagtgtttgctagtggaagatattcaagaagaact |
4494193 |
T |
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| Q |
320 |
tctcaagttgatgaagatgaagaagctcttaaatgggct |
358 |
Q |
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| T |
4494194 |
tctcaagttgatgaagatgaagaagctcttaaatgggct |
4494232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 358
Target Start/End: Complemental strand, 43466391 - 43466240
Alignment:
| Q |
207 |
aaggagaagcaaaaatggatagtaatttaagtagaagtataagtagaagcttgagtaggtcaagttggaaaatggaagaagtgtttgctagtggaagata |
306 |
Q |
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| T |
43466391 |
aaggagaaacaaaaatggaagggagtttaagtagaagcataagtaggagtttaagcaggtcaagttggagaatggagggagtgtttgctagtggaagata |
43466292 |
T |
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| Q |
307 |
ttcaagaagaacttctcaagttgatgaagatgaagaagctcttaaatgggct |
358 |
Q |
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| T |
43466291 |
ttcaagaaggacttctaatcttgatgaagatgaagaagctctcaaatgggct |
43466240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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