View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15717_high_9 (Length: 246)
Name: NF15717_high_9
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15717_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 50465326 - 50465546
Alignment:
| Q |
1 |
ttctgcttttcacccaataatttatatgtaaagannnnnnnnn-acggttaattaacccattaaatcattaatcacatttaactttaatcataattactt |
99 |
Q |
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| T |
50465326 |
ttctgcttttcacccaataatttatatgtaaagattttttttttacggttaattaacccgttaaatcattaatcacatttaactttaatattaattactt |
50465425 |
T |
|
| Q |
100 |
ctaaaagtcacatgtatgattagttgtgacaatgtaaaaaccgtctcacgcaatatgaaatatacacttagaataaaggaaagaaagtgatataagaagn |
199 |
Q |
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| T |
50465426 |
ctaaaaatcacgtgtatgattagttgtgataatgtaaaaaccgtctcacgcaatatgagatatac------aataaaggaaagaaagtgatataagaag- |
50465518 |
T |
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| Q |
200 |
nnnnnnntaatagatttgatgtagcaaaa |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
50465519 |
-aaaaaataatagatttgatgtagcaaaa |
50465546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 26491773 - 26491837
Alignment:
| Q |
54 |
aacccattaaatcattaatcacatttaactttaatcataattacttctaaaagtcacatgtatgatt |
120 |
Q |
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||||| |||||| ||||||||||||||| ||| |||||||| |||||| || |||||||||||||| |
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| T |
26491773 |
aaccctttaaattattaatcacatttaaattttatcataatcacttctcaa--tcacatgtatgatt |
26491837 |
T |
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