View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15717_low_1 (Length: 755)

Name: NF15717_low_1
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15717_low_1
NF15717_low_1
[»] chr8 (11 HSPs)
chr8 (11-532)||(38060986-38061507)
chr8 (517-721)||(38059047-38059248)
chr8 (539-634)||(24681375-24681469)
chr8 (142-218)||(13274501-13274577)
chr8 (137-215)||(29275794-29275872)
chr8 (141-216)||(19385680-19385755)
chr8 (557-634)||(29275385-29275462)
chr8 (138-201)||(21241097-21241160)
chr8 (603-634)||(41279722-41279753)
chr8 (144-186)||(44313256-44313298)
chr8 (144-186)||(44317068-44317110)
[»] chr2 (15 HSPs)
chr2 (18-215)||(24407308-24407505)
chr2 (18-206)||(24411900-24412088)
chr2 (528-631)||(80466-80568)
chr2 (118-216)||(13437699-13437796)
chr2 (528-632)||(13438126-13438228)
chr2 (541-634)||(10938448-10938539)
chr2 (541-634)||(10941805-10941896)
chr2 (541-634)||(10944310-10944401)
chr2 (541-634)||(10947674-10947765)
chr2 (541-634)||(1234326-1234417)
chr2 (642-739)||(39934451-39934548)
chr2 (642-739)||(39695565-39695662)
chr2 (642-739)||(39704474-39704571)
chr2 (144-204)||(36050193-36050253)
chr2 (680-736)||(39928807-39928863)
[»] chr6 (12 HSPs)
chr6 (529-634)||(12877746-12877850)
chr6 (109-216)||(21182568-21182675)
chr6 (53-216)||(20758669-20758839)
chr6 (541-632)||(14579001-14579091)
chr6 (529-635)||(15951541-15951646)
chr6 (528-634)||(3836077-3836183)
chr6 (529-630)||(21183002-21183102)
chr6 (529-634)||(16712866-16712968)
chr6 (529-634)||(20759236-20759339)
chr6 (141-216)||(34237308-34237383)
chr6 (588-634)||(2936644-2936690)
chr6 (144-186)||(34099594-34099636)
[»] chr7 (8 HSPs)
chr7 (109-216)||(24509576-24509683)
chr7 (109-218)||(2435122-2435231)
chr7 (529-634)||(37006261-37006364)
chr7 (122-216)||(2432906-2433000)
chr7 (529-605)||(24509974-24510049)
chr7 (529-634)||(38414115-38414217)
chr7 (142-216)||(43697351-43697425)
chr7 (603-633)||(2432387-2432417)
[»] chr4 (18 HSPs)
chr4 (118-216)||(6686461-6686559)
chr4 (115-212)||(6683232-6683329)
chr4 (529-634)||(6664357-6664463)
chr4 (529-634)||(26947467-26947571)
chr4 (542-634)||(31768233-31768324)
chr4 (540-634)||(580583-580676)
chr4 (533-634)||(6685778-6685876)
chr4 (544-635)||(13250944-13251034)
chr4 (138-215)||(579930-580007)
chr4 (533-634)||(6682323-6682421)
chr4 (148-206)||(8532494-8532552)
chr4 (126-200)||(17538528-17538603)
chr4 (126-200)||(17539575-17539650)
chr4 (529-614)||(6660767-6660852)
chr4 (148-204)||(8532765-8532821)
chr4 (592-634)||(572231-572273)
chr4 (603-634)||(31889463-31889494)
chr4 (443-530)||(6685894-6685983)
[»] scaffold0321 (1 HSPs)
scaffold0321 (529-634)||(17970-18074)
[»] scaffold0019 (1 HSPs)
scaffold0019 (529-634)||(174071-174175)
[»] chr1 (9 HSPs)
chr1 (529-635)||(27793773-27793879)
chr1 (11-194)||(8753149-8753340)
chr1 (557-634)||(48715040-48715116)
chr1 (555-614)||(8753656-8753714)
chr1 (115-189)||(49873196-49873270)
chr1 (141-214)||(964624-964696)
chr1 (109-216)||(48713564-48713669)
chr1 (18-95)||(22020155-22020232)
chr1 (603-634)||(29402461-29402492)
[»] scaffold0933 (1 HSPs)
scaffold0933 (547-636)||(1539-1627)
[»] chr3 (5 HSPs)
chr3 (543-634)||(6240607-6240698)
chr3 (137-202)||(6240151-6240216)
chr3 (144-216)||(26362578-26362650)
chr3 (591-634)||(26361893-26361936)
chr3 (127-201)||(36666061-36666135)
[»] scaffold0211 (1 HSPs)
scaffold0211 (138-216)||(20846-20924)
[»] chr5 (4 HSPs)
chr5 (557-629)||(1354204-1354275)
chr5 (595-634)||(28152141-28152180)
chr5 (603-634)||(25635538-25635569)
chr5 (607-636)||(25644659-25644688)


Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 532
Target Start/End: Complemental strand, 38061507 - 38060986
Alignment:
Q  11 gagatgaataaacttatcttattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaat 110  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||| |||||| |||||| ||||||||    
T  38061507 gagatgaataaacttatcttattgagattgttgtgtaattagatcaccgaccactactttatcagcatctttaacaatcaaattaaacccgctaccgaat 38061408  T
Q  111 caatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggat 210  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||    
T  38061407 taatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcaaactgtccttaaggattttccgcgtaattatacgctaatccccttggat 38061308  T
Q  211 ttaacataactaacaaggaaaattattttcaagaaaatggcattccacatttttaaagtttatgtgtgtgaatacacactattggatggccactaatttc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38061307 ttaacataactaacaaggaaaattattttcaagaaaatggcattccacatttttaaagtttaggtgtgtgaatacacactattggatggccactaatttc 38061208  T
Q  311 atttannnnnnnngcacaatctagcgatcgttttatttaaagaaaaataaggcaaggccaagtaaaagaatgcgtgcatactaggcgtgagtatcggctt 410  Q
    |||||        ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  38061207 atttattttttttgcacaatctagtgatcgttttatttaaagaaaaataaggcaagaccaagtaaaagaatgtgtgcatactaggtgtgagtatcggctt 38061108  T
Q  411 ctttcttataacaaggaatattttctttgaccaaacaatgttactgccacatttaagagctataaaggaaggccgttacaaaaaagtggagttaaaactt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38061107 ctttcttataacaaggaatattttctttgaccaaacaatgttactgccacatttaagagctataaaggaaggccgttacaaaaaagtggagttaaaactt 38061008  T
Q  511 gtttacaaaaccaagtcaaata 532  Q
    ||||||||||||||||||||||    
T  38061007 gtttacaaaaccaagtcaaata 38060986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 517 - 721
Target Start/End: Complemental strand, 38059248 - 38059047
Alignment:
Q  517 aaaaccaagtcaaatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaata 616  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  38059248 aaaaccaa-tcaaatattataataattttctattaaactatttttctatatttctcaattaaaa-taatgtgacacaaaatatttaaaacttttgaa-ta 38059152  T
Q  617 taatcaaaatttacaacataaaatcgcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcat 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38059151 taatcaaaatttacaacataaaatcgcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcat 38059052  T
Q  717 gggaa 721  Q
    |||||    
T  38059051 gggaa 38059047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 539 - 634
Target Start/End: Original strand, 24681375 - 24681469
Alignment:
Q  539 taattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||||| ||||||||||||||||||||||||||||  |  ||||||||||||||| ||||||||||||||| ||||||||| |||||    
T  24681375 taattttctattaaaatatttttctatatttctcaattaaaaat-ctaagacacaaaatatttgtaacttttgaaatatattcaaaatttgcaaca 24681469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 13274501 - 13274577
Alignment:
Q  142 agtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaacata 218  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||    
T  13274501 agtctgagacgtgctgatcgcactgtccttaaagattttccgcgtaattatacgttaatcccctaggatataacata 13274577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 29275872 - 29275794
Alignment:
Q  137 gaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaac 215  Q
    |||||||||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||||| || |||||||    
T  29275872 gaagtagtctgagacgtgctaatcgcactatctttaaggattttccgcgtgattatacgctaatcccctagaatttaac 29275794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 19385680 - 19385755
Alignment:
Q  141 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    ||||||||||||||||||||| ||| ||||| | |||||| | |||||||||||||||| |||||| |||||||||    
T  19385680 tagtctgagacgtgctgatcgcactatccttcatgatttttcacgtaattatacgctaaccccccaagatttaaca 19385755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 29275462 - 29275385
Alignment:
Q  557 tttttctatatttctcaattaaaaataatgtgacacaaaa-tatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||| ||||||||||||||||||||| || |||| |||| | ||||||||||||||||||||  ||||||||||||||    
T  29275462 tttttttatatttctcaattaaaaata-tgagacaaaaaaatgtttgaaacttttgaaatatacacaaaatttacaaca 29275385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 21241097 - 21241160
Alignment:
Q  138 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 201  Q
    |||||||||||||| | ||||||  | | |||||||||||||||||| ||||||||||||||||    
T  21241097 aagtagtctgagacatactgatcacaatatccttaaggattttccgcataattatacgctaatc 21241160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 634
Target Start/End: Original strand, 41279722 - 41279753
Alignment:
Q  603 aaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||||||||||||||||||||||    
T  41279722 aaacttttgaaatataatcaaaatttacaaca 41279753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 44313298 - 44313256
Alignment:
Q  144 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 186  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  44313298 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 44313256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 44317110 - 44317068
Alignment:
Q  144 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 186  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  44317110 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 44317068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 24407505 - 24407308
Alignment:
Q  18 ataaacttatcttattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaatcaatatc 117  Q
    ||||||||||||  |||||||||||||  ||||| |||||||||||||| |||||||  |||||| ||||||||||| || | | ||||||||||  ||     
T  24407505 ataaacttatctctttgagattgctgttgaattatatcaccgaccacaaatttatcaacatctttgacaaccaaattaaatctgctaccgaatcatcata 24407406  T
Q  118 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaac 215  Q
    |||||||| || ||| |||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||||| ||||||| ||||| ||||||||    
T  24407405 tgtagaacaaataagtagtgaagtagtctgagacgtgccgatcgcactgtccttatggattttctgcgtaattatgcgctaattccccaagatttaac 24407308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 24411900 - 24412088
Alignment:
Q  18 ataaacttatcttattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaatcaatatc 117  Q
    ||||||||||||  ||||||||| |||  ||||| ||||||||| |||| |||||||  |||||| |||| |||||| || | | ||||||||||  ||     
T  24411900 ataaacttatctctttgagattgttgttgaattatatcaccgactacaaatttatcaacatctttgacaagcaaattaaatctgctaccgaatcatcata 24411999  T
Q  118 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatccccca 206  Q
    |||||||| |||||| ||||||||||||||||| |||| ||| | |||||||||| ||||||| ||||||||||| | |||||||||||    
T  24412000 tgtagaacaaacaagtagtgaagtagtctgagatgtgccgatggcactgtccttatggattttacgcgtaattatgctctaatccccca 24412088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 528 - 631
Target Start/End: Complemental strand, 80568 - 80466
Alignment:
Q  528 aaatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatt 627  Q
    |||||| ||| ||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||    
T  80568 aaatataataataattttctattaaaataattttctatatttctcaattaaaaata-tgggacacaaaatatttgaaacttttgaaatatactcaaaatt 80470  T
Q  628 taca 631  Q
    ||||    
T  80469 taca 80466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 13437699 - 13437796
Alignment:
Q  118 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    ||||||||||||||||||||| ||||||||||| ||| | |||| |||||| ||||||||||||| ||||||||||||||||| || ||||||||||||    
T  13437699 tgtagaacgaacaagcagtgaggtagtctgagatgtgttaatcgcactgtctttaaggattttccacgtaattatacgctaat-cctcaggatttaaca 13437796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 528 - 632
Target Start/End: Original strand, 13438126 - 13438228
Alignment:
Q  528 aaatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatt 627  Q
    |||||| ||| ||||||| ||||||| |||||||||||||||||||||| |||||  || |||||||||||||  |||||||||||||||| ||||||||    
T  13438126 aaatattataataatttt-tattaaaatatttttctatatttctcaattgaaaatg-tgggacacaaaatattcaaaacttttgaaatatattcaaaatt 13438223  T
Q  628 tacaa 632  Q
    |||||    
T  13438224 tacaa 13438228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 541 - 634
Target Start/End: Original strand, 10938448 - 10938539
Alignment:
Q  541 attttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||| ||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  10938448 attttctattaaaatatttttctatatttctcaatagaaaat-atgagacacaaaataattg-aacttttgaaatacactcaaaatttacaaca 10938539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 541 - 634
Target Start/End: Original strand, 10941805 - 10941896
Alignment:
Q  541 attttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||| ||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  10941805 attttctattaaaatatttttctatatttctcaatagaaaat-atgagacacaaaataattg-aacttttgaaatacattcaaaatttacaaca 10941896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 541 - 634
Target Start/End: Original strand, 10944310 - 10944401
Alignment:
Q  541 attttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||| ||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  10944310 attttctattaaaatatttttctatatttctcaatagaaaat-atgagacacaaaataattg-aacttttgaaatacactcaaaatttacaaca 10944401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 541 - 634
Target Start/End: Original strand, 10947674 - 10947765
Alignment:
Q  541 attttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||| ||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  10947674 attttctattaaaatatttttctatatttctcaatagaaaat-atgagacacaaaataattg-aacttttgaaatacactcaaaatttacaaca 10947765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 541 - 634
Target Start/End: Complemental strand, 1234417 - 1234326
Alignment:
Q  541 attttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||| ||||||||||| ||| ||||||||||||| | || ||||||||||||    
T  1234417 attttctattaaaatatttttctatatttctcaatagaaaat-atgagacacaaaataattg-aacttttgaaatacactccaaatttacaaca 1234326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 642 - 739
Target Start/End: Complemental strand, 39934548 - 39934451
Alignment:
Q  642 gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgggaaacttgataatgtgtattg 739  Q
    |||||| ||||||||||| ||||| |||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| ||  ||||||||||||||||    
T  39934548 gctttttacttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattg 39934451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 739
Target Start/End: Original strand, 39695565 - 39695662
Alignment:
Q  642 gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgggaaacttgataatgtgtattg 739  Q
    |||||| | ||||||||| ||||| |||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| ||  ||||||||||||||||    
T  39695565 gctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattg 39695662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 739
Target Start/End: Original strand, 39704474 - 39704571
Alignment:
Q  642 gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgggaaacttgataatgtgtattg 739  Q
    |||||| | ||||||||| ||||| |||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| ||  ||||||||||||||||    
T  39704474 gctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatggcaaggttgataatgtgtattg 39704571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 36050253 - 36050193
Alignment:
Q  144 tctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccc 204  Q
    |||||||||||||||||| |||||||||||| |||||  ||||||||||||||||| ||||    
T  36050253 tctgagacgtgctgatcgcactgtccttaagaattttttgcgtaattatacgctaaacccc 36050193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 680 - 736
Target Start/End: Complemental strand, 39928863 - 39928807
Alignment:
Q  680 taggattactaattggttaccagatgacataaatcatgggaaacttgataatgtgta 736  Q
    ||||| |||| |||||||||| ||||||||||||||||||||  |||| ||||||||    
T  39928863 taggagtactgattggttacctgatgacataaatcatgggaagattgacaatgtgta 39928807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 529 - 634
Target Start/End: Original strand, 12877746 - 12877850
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  12877746 aatatgataataattttctattaaaatatttttctatatttctcaattaaaaat-atgggacacaaaatatttgaaacttttgaaatatactcaaaattt 12877844  T
Q  629 acaaca 634  Q
    ||||||    
T  12877845 acaaca 12877850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 21182568 - 21182675
Alignment:
Q  109 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccagg 208  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||| || ||||||||||||||||||| ||||    
T  21182568 atcaaaatctgtagaacgaacaagcagtgaggtagtctgagacgtgctgatcgcattgtccttaatgatttttcgtgtaattatacgctaatccctcagg 21182667  T
Q  209 atttaaca 216  Q
    ||||||||    
T  21182668 atttaaca 21182675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 20758669 - 20758839
Alignment:
Q  53 atcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaatcaata-------tctgtagaacgaacaagcagtgaagtagtc 145  Q
    ||||||||||||||||||||||  |||||| ||||||||||  || | | ||||||||||||        ||| |||||||||||| |||||| ||||||    
T  20758669 atcaccgaccacaactttatcaacatctttgacaaccaaataaaatctgctaccgaatcaattatcaaggtctatagaacgaacaaacagtgaggtagtc 20758768  T
Q  146 tgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    |||||||||||||||  |||||||||||| ||||||| |||  |||||||||||||||||| |||||||||    
T  20758769 tgagacgtgctgatcacactgtccttaagaattttccacgtgtttatacgctaatcccccaagatttaaca 20758839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 541 - 632
Target Start/End: Complemental strand, 14579091 - 14579001
Alignment:
Q  541 attttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaa 632  Q
    ||||||||||||| |||||||||||||||||||||||||||||  |  | | ||||||||||||||||||||||||||||||||||||||||    
T  14579091 attttctattaaaatatttttctatatttctcaattaaaaatataga-atataaaatatttgaaacttttgaaatataatcaaaatttacaa 14579001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 635
Target Start/End: Complemental strand, 15951646 - 15951541
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||||| ||||||  ||||||| || ||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||| |||||||||    
T  15951646 aatatgataataatttgttattaaaatacttttctatatttctcaattaaaaat-atgggacacaaattatttaaaacttttgaaatatactcaaaattt 15951548  T
Q  629 acaacat 635  Q
    | |||||    
T  15951547 agaacat 15951541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 528 - 634
Target Start/End: Original strand, 3836077 - 3836183
Alignment:
Q  528 aaatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacac-aaaatatttgaaacttttgaaatataatcaaaat 626  Q
    |||||| ||| ||||||| ||||||| || ||||||||||||||||||||||||| |||  |||| |||||||||||||||||||||||||  |||||||    
T  3836077 aaatataataataattttttattaaaatacttttctatatttctcaattaaaaat-atggaacacaaaaatatttgaaacttttgaaatatgttcaaaat 3836175  T
Q  627 ttacaaca 634  Q
    ||||||||    
T  3836176 ttacaaca 3836183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 21183002 - 21183102
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||||| || |||||||||||| |||||||||||||||||||||| ||||| |||  |||||||||||  |||| |||| |||||||||||||||||    
T  21183002 aatatgataatagttttctattaaaatatttttctatatttctcaattgaaaat-atggaacacaaaatataagaaatttttaaaatataatcaaaattt 21183100  T
Q  629 ac 630  Q
    ||    
T  21183101 ac 21183102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 529 - 634
Target Start/End: Original strand, 16712866 - 16712968
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||| | ||||||||||||||| || ||||||||||||||| ||| ||||| ||| |||||  ||||||| ||||||||||||||| ||||||||||    
T  16712866 aatatgagaataattttctattaaaataattttctatatttctctatt-aaaattatgggacac--aatatttaaaacttttgaaatattatcaaaattt 16712962  T
Q  629 acaaca 634  Q
    ||||||    
T  16712963 acaaca 16712968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 529 - 634
Target Start/End: Original strand, 20759236 - 20759339
Alignment:
Q  529 aatatgatagtaattttctattaaactatttt--tctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaat 626  Q
    ||||||||||||||||| ||| ||| ||||||  |||||||||||||| ||||| || || ||||||||   |||||||||||||||||||| |||||||    
T  20759236 aatatgatagtaattttttatcaaaatattttaatctatatttctcaaataaaatta-tgggacacaaa---tttgaaacttttgaaatatactcaaaat 20759331  T
Q  627 ttacaaca 634  Q
    ||||||||    
T  20759332 ttacaaca 20759339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 34237308 - 34237383
Alignment:
Q  141 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    ||||||||||| |  |||||| |||||||||||||||||||||||||||||||| |||||  || |||||||||||    
T  34237308 tagtctgagacatattgatcgcactgtccttaaggattttccgcgtaattatacactaatttcctaggatttaaca 34237383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 588 - 634
Target Start/End: Original strand, 2936644 - 2936690
Alignment:
Q  588 gacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  2936644 gacacaaaatatttgaaatttttgaaatataatcaaaatttacaaca 2936690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 34099594 - 34099636
Alignment:
Q  144 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 186  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  34099594 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 34099636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 24509576 - 24509683
Alignment:
Q  109 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccagg 208  Q
    ||||| || |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  24509576 atcaaaatatgtagaacgaacaaccagtgaggtagtctgagacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatcgcccagg 24509675  T
Q  209 atttaaca 216  Q
    ||||||||    
T  24509676 atttaaca 24509683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 2435231 - 2435122
Alignment:
Q  109 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccagg 208  Q
    ||||| |||||| |||||||||| || ||| ||||||| |||||||||||||| ||| | |||||||||||| |||||||||||||| |||||||||| |    
T  2435231 atcaagatctgtggaacgaacaaacaatgaggtagtcttagacgtgctgatcgcacttttcttaaggatttttcgcgtaattatacgttaatcccccaag 2435132  T
Q  209 atttaacata 218  Q
    ||||||||||    
T  2435131 atttaacata 2435122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 529 - 634
Target Start/End: Complemental strand, 37006364 - 37006261
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||||| |||||||| |||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||    
T  37006364 aatatgataataattttccattaaaatatttttc-atatttctaaattaaaaata-tgggacacaaaatatttgaaacttttaaaatatactcaaaattt 37006267  T
Q  629 acaaca 634  Q
    ||||||    
T  37006266 acaaca 37006261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 2433000 - 2432906
Alignment:
Q  122 gaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    |||||||||| || ||| |||| |||| || ||||||||  |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  2433000 gaacgaacaaacaatgaggtagactgaaacatgctgatcacactgtccttaaggattttccacgtaattatacgctaatcctccaagatttaaca 2432906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 529 - 605
Target Start/End: Original strand, 24509974 - 24510049
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaa 605  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  24509974 aatattataataattttctattaaaatatttttctatatttctcaattaaaaat-ataggacacaaaatatttgaaa 24510049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 529 - 634
Target Start/End: Complemental strand, 38414217 - 38414115
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||| | ||||||||||||||| || |||||||||||||| |||||||||||   |   ||| ||||||| |||||||||||||||| |||||||||    
T  38414217 aatatgaaaataattttctattaaaataattttctatatttctaaattaaaaata---taggacataatatttaaaacttttgaaatatactcaaaattt 38414121  T
Q  629 acaaca 634  Q
    ||||||    
T  38414120 acaaca 38414115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 43697425 - 43697351
Alignment:
Q  142 agtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    ||||||||||||||||||||   |||||||||||||||| | |||||||||| ||||| | ||||||||||||||    
T  43697425 agtctgagacgtgctgatcgcgttgtccttaaggatttttcacgtaattatatgctaaccgcccaggatttaaca 43697351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 633
Target Start/End: Complemental strand, 2432417 - 2432387
Alignment:
Q  603 aaacttttgaaatataatcaaaatttacaac 633  Q
    |||||||||||||||||||||||||||||||    
T  2432417 aaacttttgaaatataatcaaaatttacaac 2432387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 6686559 - 6686461
Alignment:
Q  118 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    ||||||| ||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6686559 tgtagaatgaacaagtagtgaggcagtctgagacgtgctgatcgcactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 6686461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 6683329 - 6683232
Alignment:
Q  115 atctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 212  Q
    |||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6683329 atctgtagaacgaacaagtagtgaggcagtctgagacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatcctccaggattt 6683232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 529 - 634
Target Start/End: Original strand, 6664357 - 6664463
Alignment:
Q  529 aatatgatagtaattttctatt-aaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatt 627  Q
    ||||||||| || ||||||||| ||| |||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| | ||||||||    
T  6664357 aatatgataatagttttctatttaaaatatttttctatatttctcaattaaaaaatatgggacacaaaatatttgaaacttttgaaatacactcaaaatt 6664456  T
Q  628 tacaaca 634  Q
    |||||||    
T  6664457 tacaaca 6664463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 529 - 634
Target Start/End: Complemental strand, 26947571 - 26947467
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||||| ||||||||||||||| |||||||  ||||||||||||| |||||| || |||||||||||||| | ||||||||||||||||||||||||    
T  26947571 aatatgataataattttctattaaaatatttttagatatttctcaattgaaaata-tgggacacaaaatattttagacttttgaaatataatcaaaattt 26947473  T
Q  629 acaaca 634  Q
    ||||||    
T  26947472 acaaca 26947467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 542 - 634
Target Start/End: Original strand, 31768233 - 31768324
Alignment:
Q  542 ttttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    |||| ||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  31768233 ttttttattaaaataattttctatatttctcaattaaaaata-tgggacacaaaatatttgaaacttttgaaatatactcaaaatttacaaca 31768324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 540 - 634
Target Start/End: Original strand, 580583 - 580676
Alignment:
Q  540 aattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    |||||||| ||||| |||||||||||||||||||||| |||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
T  580583 aattttcttttaaaatatttttctatatttctcaattgaaaata-tgggacacaaaatatttaaaacttttgaaatatactcaaaatttacaaca 580676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 533 - 634
Target Start/End: Complemental strand, 6685876 - 6685778
Alignment:
Q  533 tgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaa 632  Q
    ||||| ||||||| ||| ||| ||||||| |||||||||||||||||||||   ||  |||||||||||||||||||||||||||| |||||||||||||    
T  6685876 tgataataattttttataaaaatatttttttatatttctcaattaaaaata---tgggacaaaatatttgaaacttttgaaatatactcaaaatttacaa 6685780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 544 - 635
Target Start/End: Original strand, 13250944 - 13251034
Alignment:
Q  544 ttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaacat 635  Q
    |||||||||| |||||||| |||| | |||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||    
T  13250944 ttctattaaaatatttttcgatatatttcaattgaaaata-tgggacataaaatatttgaaacttttgaaatataatcaaaatttacaacat 13251034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 579930 - 580007
Alignment:
Q  138 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaac 215  Q
    ||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  579930 aagtagtctgaaacatgctgatcgcactgttcttaaggattttccgcgtaattatacgttaatcccccagaatttaac 580007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 533 - 634
Target Start/End: Complemental strand, 6682421 - 6682323
Alignment:
Q  533 tgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaa 632  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||||||||||   |   |||||||||||||||||||| ||||||| |||||||||| ||    
T  6682421 tgataataattttctataaaattatttttctatatttctcaattaaaaata---taggacaaaatatttgaaacttttaaaatatactcaaaatttataa 6682325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 8532494 - 8532552
Alignment:
Q  148 agacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatccccca 206  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  8532494 agacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatccccca 8532552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 17538603 - 17538528
Alignment:
Q  126 gaacaagcagtgaa-gtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaat 200  Q
    |||||| ||||||| ||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  17538603 gaacaaacagtgaaagtagtctaagacgtgctgatcgcactgtgcttaagcattttccgcgtaattatacgctaat 17538528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 17539650 - 17539575
Alignment:
Q  126 gaacaagcagtgaa-gtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaat 200  Q
    |||||| ||||||| ||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  17539650 gaacaaacagtgaaagtagtctaagacgtgctgatcgcactgtgcttaagcattttccgcgtaattatacgctaat 17539575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 529 - 614
Target Start/End: Original strand, 6660767 - 6660852
Alignment:
Q  529 aatatgatagtaattttctatt-aaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaa 614  Q
    ||||||||| || ||||||||| ||| ||||||||||||||||||||||||||| ||| ||  ||| ||||||||||||||||||||    
T  6660767 aatatgataatagttttctatttaaaatatttttctatatttctcaattaaaaa-aatatgggacacaatatttgaaacttttgaaa 6660852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 8532765 - 8532821
Alignment:
Q  148 agacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccc 204  Q
    |||||||||||||  ||||||||||| |||||| |||||||||||||||||||||||    
T  8532765 agacgtgctgatcacactgtccttaatgatttttcgcgtaattatacgctaatcccc 8532821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 634
Target Start/End: Original strand, 572231 - 572273
Alignment:
Q  592 caaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  572231 caaaatattagaaacttttgaaatatactcaaaatttacaaca 572273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 634
Target Start/End: Complemental strand, 31889494 - 31889463
Alignment:
Q  603 aaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||||||||||||||||||||||    
T  31889494 aaacttttgaaatataatcaaaatttacaaca 31889463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 530
Target Start/End: Complemental strand, 6685983 - 6685894
Alignment:
Q  443 aaacaatgttactgccacatttaagagctataaaggaaggcc-gttacaaaaaagtggagttaaaacttgtttac-aaaaccaagtcaaa 530  Q
    ||||||| ||| | ||| ||| ||||| |||||||||| ||| ||||||||||| |||| ||||||| ||| ||| ||||||||||||||    
T  6685983 aaacaatattattcccatattcaagagatataaaggaatgccagttacaaaaaattggaattaaaacatgtctacaaaaaccaagtcaaa 6685894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 529 - 634
Target Start/End: Complemental strand, 18074 - 17970
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||||  || |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||||    
T  18074 aatatgatgatagttttctattaaaatatttttctatatttctcaattaaaaata-tgggacacaaaatatttgaaacttttgaaatatacttaaaattt 17976  T
Q  629 acaaca 634  Q
    ||||||    
T  17975 acaaca 17970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 529 - 634
Target Start/End: Complemental strand, 174175 - 174071
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||||||| ||||||| ||||||| |||||||| ||||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||    
T  174175 aatatgataataattttttattaaaatatttttcgatatttctcaattgaaagta-tgagacacaaaatatttgaaacttttgaaatataatcaaaattt 174077  T
Q  629 acaaca 634  Q
    ||||||    
T  174076 acaaca 174071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 635
Target Start/End: Original strand, 27793773 - 27793879
Alignment:
Q  529 aatatgatagtaattttctattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattt 628  Q
    ||||| ||| || |||||||||||| |||||| |||||||||| |||||||||  |||  ||||||||||||| |||||||||||||||| |||||||||    
T  27793773 aatattataatagttttctattaaaatattttcctatatttcttaattaaaaaatatggaacacaaaatatttaaaacttttgaaatatactcaaaattt 27793872  T
Q  629 acaacat 635  Q
    |||||||    
T  27793873 acaacat 27793879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 8753149 - 8753340
Alignment:
Q  11 gagatgaataaacttatct-tattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaa 109  Q
    ||||| ||||||||||||| | || |||||| |||  || || |||||||||||||||| |||||  |||||| |||||| |||  ||||   |||||||    
T  8753149 gagattaataaacttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctactaccgaa 8753248  T
Q  110 tcaa-tatc------tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatac 194  Q
    |||| ||||      ||||||||||||||||||||| ||||||||||||| |||||||  |||||| ||||| |||||||||||||||||||    
T  8753249 tcaactatcaagatatgtagaacgaacaagcagtgaggtagtctgagacgagctgatcacactgtctttaagaattttccgcgtaattatac 8753340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 557 - 634
Target Start/End: Original strand, 48715040 - 48715116
Alignment:
Q  557 tttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    |||||||||||||||||||| |||||| ||  ||||||| |||||||||||||||||||||| |||||||||||||||    
T  48715040 tttttctatatttctcaattgaaaata-tggaacacaaattatttgaaacttttgaaatatactcaaaatttacaaca 48715116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 614
Target Start/End: Original strand, 8753656 - 8753714
Alignment:
Q  555 tatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaa 614  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  8753656 tatttttctatatttctcaattaaatata-tgggacacaaaatatttgaaacttttgaaa 8753714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 49873196 - 49873270
Alignment:
Q  115 atctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaat 189  Q
    |||||||||||||||   |||||| |||||||||||||||||||||| | ||| |||||| ||||||||||||||    
T  49873196 atctgtagaacgaactgacagtgaggtagtctgagacgtgctgatcgcattgttcttaagaattttccgcgtaat 49873270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 964696 - 964624
Alignment:
Q  141 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaa 214  Q
    |||||||||||||||| |||| ||||||||||||||||||| || ||| |||||||||| || |||||||||||    
T  964696 tagtctgagacgtgcttatcgcactgtccttaaggattttctgcataaatatacgctaa-cctccaggatttaa 964624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 48713564 - 48713669
Alignment:
Q  109 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccagg 208  Q
    ||||| ||||||||||| |||| ||| | |  |||||||||||||| |||||| ||||| |||||||||||||  ||| ||||||||||||  |||||||    
T  48713564 atcaagatctgtagaacaaacacgcaataagatagtctgagacgtgttgatcgcactgt-cttaaggattttctacgtgattatacgctaa-accccagg 48713661  T
Q  209 atttaaca 216  Q
    ||||||||    
T  48713662 atttaaca 48713669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 22020232 - 22020155
Alignment:
Q  18 ataaacttatcttattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaattt 95  Q
    ||||||||||||  ||||||||| |||  ||||| |||| |||||||||||||||||  ||||||| |||| ||||||    
T  22020232 ataaacttatctctttgagattgttgttaaattagatcatcgaccacaactttatcaacatctttatcaacaaaattt 22020155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 634
Target Start/End: Original strand, 29402461 - 29402492
Alignment:
Q  603 aaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||||||||||||||||||||||    
T  29402461 aaacttttgaaatataatcaaaatttacaaca 29402492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 547 - 636
Target Start/End: Original strand, 1539 - 1627
Alignment:
Q  547 tattaaactatttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaacata 636  Q
    ||||||| |||||||| ||||||||||||| | |||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1539 tattaaaatatttttcgatatttctcaattgataata-tgggacacaaaatatttgaaacttttaaaatataatcaaaatttacaacata 1627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 543 - 634
Target Start/End: Original strand, 6240607 - 6240698
Alignment:
Q  543 tttctattaaactatttttc-tatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||| |||||||  |||||||||||||||||||||  | |||||||||||||| |||||||||||||||| |||||||||||||||    
T  6240607 tttctattaaaatattttttatatatttctcaattaaaaatatag-gacacaaaatatttaaaacttttgaaatatactcaaaatttacaaca 6240698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 6240151 - 6240216
Alignment:
Q  137 gaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcc 202  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||||| ||||||||| |||||||    
T  6240151 gaagtagtctgagacatgctgatcacactgtctttaaggattttccgcttaattatactctaatcc 6240216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 26362650 - 26362578
Alignment:
Q  144 tctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    ||||||| || ||||||| | |||||||||||||||| ||| |||||||||||||||||| || |||||||||    
T  26362650 tctgagatgtactgatcgcattgtccttaaggatttttcgcataattatacgctaatccctcatgatttaaca 26362578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 591 - 634
Target Start/End: Complemental strand, 26361936 - 26361893
Alignment:
Q  591 acaaaatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    |||||||||||||||||||||||||||| |||||| ||||||||    
T  26361936 acaaaatatttgaaacttttgaaatatactcaaaaattacaaca 26361893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 36666135 - 36666061
Alignment:
Q  127 aacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 201  Q
    |||||||||||| ||| ||| ||||||| |||||| ||| |||||||| ||||||  | ||||||||| ||||||    
T  36666135 aacaagcagtgaggtaatctcagacgtgttgatcgcactttccttaagtattttctacctaattatacactaatc 36666061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 20846 - 20924
Alignment:
Q  138 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggatttaaca 216  Q
    ||||||| ||||||||| |||||| ||| |||||||  |||||| ||||||||||| |||||||| |||||||||||||    
T  20846 aagtagtatgagacgtgttgatcgcactatccttaaaaattttctgcgtaattatatgctaatcctccaggatttaaca 20924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 557 - 629
Target Start/End: Original strand, 1354204 - 1354275
Alignment:
Q  557 tttttctatatttctcaattaaaaataatgtgacacaaaatatttgaaacttttgaaatataatcaaaattta 629  Q
    |||||||||||||||||||||||||| ||| |||||||  ||||| |||||||||||||||| | ||||||||    
T  1354204 tttttctatatttctcaattaaaaat-atgagacacaaggtatttaaaacttttgaaatatatttaaaattta 1354275  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 595 - 634
Target Start/End: Original strand, 28152141 - 28152180
Alignment:
Q  595 aatatttgaaacttttgaaatataatcaaaatttacaaca 634  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  28152141 aatatttgaaacttttgaaatatactcaaaatttacaaca 28152180  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 634
Target Start/End: Original strand, 25635538 - 25635569
Alignment:
Q  603 aaacttttgaaatataatcaaaatttacaaca 634  Q
    ||||||||||||||||||||||||||||||||    
T  25635538 aaacttttgaaatataatcaaaatttacaaca 25635569  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 636
Target Start/End: Original strand, 25644659 - 25644688
Alignment:
Q  607 ttttgaaatataatcaaaatttacaacata 636  Q
    ||||||||||||||||||||||||||||||    
T  25644659 ttttgaaatataatcaaaatttacaacata 25644688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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