View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15717_low_10 (Length: 293)
Name: NF15717_low_10
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15717_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 2564200 - 2564462
Alignment:
| Q |
1 |
tagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgccaggaagttactctctacagattnnnnnnnctcctggtatatatttacttat |
100 |
Q |
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| T |
2564200 |
tagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgcaaggaagttactctctacagattaaaaaaacacctggtatatatttacttat |
2564299 |
T |
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| Q |
101 |
aggtcagtcttatttcaatcaacattaattcattattgatggaatgagctgaattagcatttgatttattattaactcaggtggacttttgtatactaga |
200 |
Q |
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| T |
2564300 |
aggtcaatcttatttcaatcaacattaattcattattgatggaatgagctgaatta------------ttattaactcaggtggacttttgtatactaga |
2564387 |
T |
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| Q |
201 |
gatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcctaaacaaaaat |
275 |
Q |
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| T |
2564388 |
gatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcctaaacaaaaat |
2564462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 2574246 - 2574356
Alignment:
| Q |
164 |
atttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatc |
263 |
Q |
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||||||| ||||||||||||| ||| |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2574246 |
atttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatc |
2574345 |
T |
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| Q |
264 |
ctaaacaaaaa |
274 |
Q |
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| T |
2574346 |
ttaaacaaaaa |
2574356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 2574098 - 2574148
Alignment:
| Q |
17 |
tgatggtgaatcatttatatgtgctttgatgccaggaagttactctctaca |
67 |
Q |
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||||| |||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
2574098 |
tgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctaca |
2574148 |
T |
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