View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15717_low_12 (Length: 266)

Name: NF15717_low_12
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15717_low_12
NF15717_low_12
[»] chr6 (1 HSPs)
chr6 (16-260)||(28940754-28940998)
[»] scaffold0039 (1 HSPs)
scaffold0039 (80-157)||(29043-29120)
[»] chr1 (3 HSPs)
chr1 (78-135)||(50391950-50392007)
chr1 (80-135)||(11199965-11200020)
chr1 (82-134)||(43834538-43834590)
[»] chr7 (4 HSPs)
chr7 (78-161)||(2463175-2463256)
chr7 (80-167)||(7631266-7631352)
chr7 (185-249)||(11776228-11776292)
chr7 (78-130)||(27938807-27938859)
[»] chr4 (2 HSPs)
chr4 (98-134)||(8178649-8178685)
chr4 (82-123)||(4235910-4235951)
[»] chr2 (4 HSPs)
chr2 (80-166)||(19548157-19548241)
chr2 (80-134)||(10066574-10066628)
chr2 (75-125)||(12894286-12894336)
chr2 (78-134)||(8252648-8252704)
[»] chr5 (1 HSPs)
chr5 (84-134)||(18415615-18415665)
[»] chr8 (3 HSPs)
chr8 (185-242)||(2954389-2954446)
chr8 (80-136)||(5073023-5073079)
chr8 (185-249)||(5981607-5981671)
[»] chr3 (5 HSPs)
chr3 (185-249)||(40195985-40196049)
chr3 (82-135)||(37626643-37626696)
chr3 (78-131)||(42059854-42059907)
chr3 (80-129)||(43978636-43978685)
chr3 (187-239)||(23162125-23162176)
[»] scaffold0548 (1 HSPs)
scaffold0548 (88-161)||(4137-4209)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 28940754 - 28940998
Alignment:
Q  16 gggggaccacccatcttagacaagagcaaccacacaagcgaaaaaaggcaccatatacttttatccaaaatcttaagacattaggtatacgagtctcttc 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28940754 gggggaccacccatcttagacaagagcaacaacacaagcgaaaaaaggcaccatatacttttatccaaaatcttaagacattaggtatacgagtctcttc 28940853  T
Q  116 tcttatatatccaacatttttcttcattttctagtcgatgtgagacttaactgctaacgtccaatatctaacaatccccccgtcaagtatgagttaccca 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28940854 tcttatatgtccaacatttttcttcattttctagtcgatgtgagacttaactgctcacgtccaatatctaacaatccccccgtcaagtatgagttaccca 28940953  T
Q  216 cattactagcttgattcacactaggattccgctctctcgtcaagt 260  Q
    |||||||||| |||||||||||||||||||||||||| |||||||    
T  28940954 cattactagcctgattcacactaggattccgctctcttgtcaagt 28940998  T

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Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 29120 - 29043
Alignment:
Q  80 ccaaaatcttaagacattaggtatacgagtctcttctcttat--atatccaacatttttcttcattttctagtcgatgtg 157  Q
    ||||||||||||||||| || |||| ||||| | ||||||||  ||||||||||||||  ||||||||||||||||||||    
T  29120 ccaaaatcttaagacatcagatatatgagtcccctctcttatatatatccaacatttt--ttcattttctagtcgatgtg 29043  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 50391950 - 50392007
Alignment:
Q  78 atccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaacatttt 135  Q
    |||||||| |||||||||||||||||| ||||| | | ||||||||||||||||||||    
T  50391950 atccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 50392007  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 11200020 - 11199965
Alignment:
Q  80 ccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaacatttt 135  Q
    |||||| |||||| ||||||| ||| ||||| | ||||||||||||||||||||||    
T  11200020 ccaaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacatttt 11199965  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 43834590 - 43834538
Alignment:
Q  82 aaaatcttaagacattaggtatacgagtctcttctcttatatatccaacattt 134  Q
    |||| |||||||||||||||||| | ||| | |||||||||||| ||||||||    
T  43834590 aaaaccttaagacattaggtatatgggtcccctctcttatatattcaacattt 43834538  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 2463256 - 2463175
Alignment:
Q  78 atccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaacatttttcttcattttctagtcgatgtgagac 161  Q
    |||||||| ||| || | ||||||||| | |||  |||||||||||||||||||  |||| |||||||||||||||||||||||    
T  2463256 atccaaaacctttaggctttaggtatatgggtccattctcttatatatccaaca--tttcctcattttctagtcgatgtgagac 2463175  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 7631266 - 7631352
Alignment:
Q  80 ccaaaatcttaagacattaggtatacgag-tctcttctcttatatatccaacatttttcttcattttctagtcgatgtgagacttaact 167  Q
    |||||| |||||| ||||||||||| | | |||| |||||||||||||||||| |||||| ||||||| |||||||||| |||||||||    
T  7631266 ccaaaagcttaagccattaggtatatggggtctcctctcttatatatccaaca-ttttctccattttc-agtcgatgtgggacttaact 7631352  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 11776228 - 11776292
Alignment:
Q  185 aacaatccccccgtcaagtatgagttacccacattactagcttgattcacactaggattccgctc 249  Q
    ||||||| |||| |||||||||||| |||||||| |||||| |||| ||| ||||||| ||||||    
T  11776228 aacaatctccccctcaagtatgagtcacccacatcactagcctgatccacgctaggatcccgctc 11776292  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 27938859 - 27938807
Alignment:
Q  78 atccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaac 130  Q
    |||||||| |||||| | ||||||||| ||||||| | |||||||||||||||    
T  27938859 atccaaaaccttaaggctttaggtatatgagtctcctttcttatatatccaac 27938807  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 8178685 - 8178649
Alignment:
Q  98 aggtatacgagtctcttctcttatatatccaacattt 134  Q
    |||||||||||||||||||||||||||||||||||||    
T  8178685 aggtatacgagtctcttctcttatatatccaacattt 8178649  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 4235910 - 4235951
Alignment:
Q  82 aaaatcttaagacattaggtatacgagtctcttctcttatat 123  Q
    |||| |||| ||||||||||||||||||| ||||||||||||    
T  4235910 aaaaccttatgacattaggtatacgagtcacttctcttatat 4235951  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 19548241 - 19548157
Alignment:
Q  80 ccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaacatttttcttcattttctagtcgatgtgagacttaac 166  Q
    |||||| ||||||||||||| |||| | ||||| ||||||||||||||||||  |||| ||  ||||||||||||||| ||| ||||    
T  19548241 ccaaaaccttaagacattagatatatgggtctcctctcttatatatccaaca--tttcctctatttctagtcgatgtgggacataac 19548157  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 10066628 - 10066574
Alignment:
Q  80 ccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaacattt 134  Q
    ||||||||||||| ||||||||||| |  |||| | |||||||||||||||||||    
T  10066628 ccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 12894286 - 12894336
Alignment:
Q  75 tttatccaaaatcttaagacattaggtatacgagtctcttctcttatatat 125  Q
    |||||||||||||||||||||||| |||||  | |||||||| ||||||||    
T  12894286 tttatccaaaatcttaagacattatgtatataaatctcttcttttatatat 12894336  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 8252648 - 8252704
Alignment:
Q  78 atccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaacattt 134  Q
    ||||||||  ||||| | ||||||||||||||  | |||||||||||||||||||||    
T  8252648 atccaaaactttaaggcgttaggtatacgagttacctctcttatatatccaacattt 8252704  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 18415615 - 18415665
Alignment:
Q  84 aatcttaagacattaggtatacgagtctcttctcttatatatccaacattt 134  Q
    |||||||||||||||||| || ||||||| | |||||||||||||||||||    
T  18415615 aatcttaagacattaggtttatgagtctcctatcttatatatccaacattt 18415665  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 2954389 - 2954446
Alignment:
Q  185 aacaatccccccgtcaagtatgagttacccacattactagcttgattcacactaggat 242  Q
    ||||||| |||| |||||| ||||| |||||||| ||||||||||| |||||||||||    
T  2954389 aacaatctccccctcaagtgtgagtcacccacatcactagcttgatccacactaggat 2954446  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 5073079 - 5073023
Alignment:
Q  80 ccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaacattttt 136  Q
    |||||| |||||| ||||| ||||| ||| | | |||||||||||||||||||||||    
T  5073079 ccaaaaccttaaggcattacgtatatgagacgcctctcttatatatccaacattttt 5073023  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 5981607 - 5981671
Alignment:
Q  185 aacaatccccccgtcaagtatgagttacccacattactagcttgattcacactaggattccgctc 249  Q
    ||||||| |||| |||||  ||||| |||||||| |||||| |||| ||||||||||| ||||||    
T  5981607 aacaatctccccctcaagcgtgagtcacccacatcactagcctgatccacactaggatcccgctc 5981671  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 40195985 - 40196049
Alignment:
Q  185 aacaatccccccgtcaagtatgagttacccacattactagcttgattcacactaggattccgctc 249  Q
    ||||||| |||| |||||| ||||| |||||||| |||||| |||| ||||||||||| ||||||    
T  40195985 aacaatctccccctcaagtgtgagtcacccacatcactagcctgatccacactaggatcccgctc 40196049  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 37626696 - 37626643
Alignment:
Q  82 aaaatcttaagacattaggtatacgagtctcttctcttatatatccaacatttt 135  Q
    ||||||||||||||||||||||| |  |  | ||||||||||||||||||||||    
T  37626696 aaaatcttaagacattaggtatatgtatgacctctcttatatatccaacatttt 37626643  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 42059854 - 42059907
Alignment:
Q  78 atccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaaca 131  Q
    |||||||| |||||||||||||||||| | ||| | ||||||||||||| ||||    
T  42059854 atccaaaaccttaagacattaggtataagtgtcccctctcttatatatcaaaca 42059907  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 43978636 - 43978685
Alignment:
Q  80 ccaaaatcttaagacattaggtatacgagtctcttctcttatatatccaa 129  Q
    |||||| |||||| || |||||||| ||||||| ||||||||||||||||    
T  43978636 ccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaa 43978685  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 23162176 - 23162125
Alignment:
Q  187 caatccccccgtcaagtatgagttacccacattactagcttgattcacactag 239  Q
    |||||||||| |||||| ||||| ||||||||||||||| |||| ||||||||    
T  23162176 caatcccccc-tcaagtgtgagtcacccacattactagcctgatccacactag 23162125  T

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Target: scaffold0548 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 4137 - 4209
Alignment:
Q  88 ttaagacattaggtatacgagtctcttctcttatatatccaacatttttcttcattttctagtcgatgtgagac 161  Q
    ||||||||| ||||||| | ||| | ||||| |||||||||||||||| || || ||| |||||||||||||||    
T  4137 ttaagacatgaggtatatgtgtcccctctctcatatatccaacattttcctcca-tttatagtcgatgtgagac 4209  T

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