View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15717_low_18 (Length: 236)
Name: NF15717_low_18
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15717_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 7055701 - 7055897
Alignment:
| Q |
24 |
ttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaatatgtttctat |
123 |
Q |
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| T |
7055701 |
ttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaatatgtttctat |
7055800 |
T |
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| Q |
124 |
cggactcttgcgctttgttccgtaaatcggttcgcatattggaagcaacacagtttcatcattgctcgctagtactatattgttcaaaccactctca |
220 |
Q |
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| T |
7055801 |
cggactcttgcgctttgttccgtaaatgggttcgcatatcggaagcaacacagtttcatcattgctcgctagtactacattgttcaaaccactctca |
7055897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 39641842 - 39642007
Alignment:
| Q |
27 |
tcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaatatgtttctatcgg |
126 |
Q |
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|||| |||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
39641842 |
tctttctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaatacgtttctatcgt |
39641941 |
T |
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| Q |
127 |
actcttgcgctttgttccgtaaatcggttcgcatattggaagcaacacagtttcatcattgctcgc |
192 |
Q |
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||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||| |||| |
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| T |
39641942 |
actcttgcgctttgttccgtaaacaggttcgcacaacggaagcaacaccgtttcatcattgttcgc |
39642007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 39680407 - 39680285
Alignment:
| Q |
27 |
tcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaatatgtttctatcgg |
126 |
Q |
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|||| |||||||| || | |||||| |||||||| | ||| ||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| | |
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| T |
39680407 |
tctttctcatttccctcagtgtcctaaatatatccgctgacatcaacgccaaatgctgtaacccagcaccttcattgtgttccaaatacgtttctatttg |
39680308 |
T |
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| Q |
127 |
actcttgcgctttgttccgtaaa |
149 |
Q |
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|||||| | |||||||||||||| |
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| T |
39680307 |
actctttctctttgttccgtaaa |
39680285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 39637210 - 39637316
Alignment:
| Q |
24 |
ttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaatatgtttctat |
123 |
Q |
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||||||| ||||||||||| |||||| |||||||||| || ||| ||| |||| ||| || ||||| |||||||| ||||||||||||| |||||||| |
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| T |
39637210 |
ttttctttctcatttctctcaatgtcttgaatatatcctccgacatcaacgccacatgttgtaaccctgcaccttcgctgtgttccaaataagtttctat |
39637309 |
T |
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| Q |
124 |
cggactc |
130 |
Q |
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||||||| |
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| T |
39637310 |
cggactc |
39637316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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