View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15717_low_5 (Length: 386)
Name: NF15717_low_5
Description: NF15717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15717_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 21145052 - 21144675
Alignment:
| Q |
9 |
ggacatcatcatcactcaacaacgacaactctccccttaaatccacctcttgtacatcttcttttaacctagaaattctctcttacatcgaaccatgctc |
108 |
Q |
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| T |
21145052 |
ggacatcttcatcattcaacaacgacaactctccccttaaatccacctcttgtatatcttcttttaacctagaaattctctcttacatcgaaccatactc |
21144953 |
T |
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| Q |
109 |
ctccttgttccactctctaagccttcctttaaccccttttagtttctcttttaacacaaatcccatccatcacgttaaatgttgtgaattccacacctcc |
208 |
Q |
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| T |
21144952 |
ctccttgttccactctctaagccttcctttaaccccttttagtttctcttttaacagaaatcccatccatcacgttaaatgttgtgaattccacacctcc |
21144853 |
T |
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| Q |
209 |
tcaaccacctctttgatttgcctattatccaaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatc |
308 |
Q |
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| T |
21144852 |
tcaaccacctctttgatttgcctattatccaaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatc |
21144753 |
T |
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| Q |
309 |
caagaactcaccaaattggtctccaatctgcttgaaagcctcttcatcccagacatgaactggtaaacttaggatttt |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21144752 |
caagaactcaccaaattggtctccaatctgcttgaaagcctcttcatcccagacatgaactggtaaacttaggatttt |
21144675 |
T |
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