View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15718_high_11 (Length: 463)
Name: NF15718_high_11
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 49 - 442
Target Start/End: Original strand, 52322363 - 52322778
Alignment:
| Q |
49 |
caagattatatgatcttatgaagattaacaatttcaacatgggaaattaactgatgagtgaaagctgtgttcaagggtggtgccaaagaaaaaatgatat |
148 |
Q |
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| T |
52322363 |
caagattttatgatcttatgaagattaacaatttcaacatgggaaattaactgatgagtgaaagctgtgttcaagggtggtgccaaagaaaaaatgatat |
52322462 |
T |
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| Q |
149 |
aaaatgtaataaacatatgtttgtcattaataatgttctata----------ctctctctctcatattattgttttactataagccaagatataaggtga |
238 |
Q |
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| T |
52322463 |
aaaatgtaataaacatatgtttgtcattaataatgttctatactctctctctctctctctctcatattattgttttactataagccaagatataaggtga |
52322562 |
T |
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| Q |
239 |
ggacggctgacaatgccaactcatttttgtcctgtgtaatattaattaatataaggtgtttctttattgaa-------tggttaatgtttttatttaaag |
331 |
Q |
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| T |
52322563 |
ggacggctgacaatgccaactcatttttgtcctgtgtaatattaattaatataagatgtttctttattgaatcctgattggttaatgtttttatttaaag |
52322662 |
T |
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| Q |
332 |
ttgaacaatattatgatt-nnnnnnnnccagaagttcaaaatcatttggttgg----tacttctatcattttagtgtattgtccttaacgtgcacttcaa |
426 |
Q |
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| T |
52322663 |
ttgaacaatattatgattaaaaaaaaaccagaagttcaaaatcatttggttggtacttacttctatcattttagtgtattgtccttaacgtgcacctcaa |
52322762 |
T |
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| Q |
427 |
gttgttgagctagtgt |
442 |
Q |
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| T |
52322763 |
gttgttgagctagtgt |
52322778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52322253 - 52322303
Alignment:
| Q |
1 |
taatttgatttttattctataaacaaattaatcacagcttcatttctccaa |
51 |
Q |
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| T |
52322253 |
taatttgatttttattctataaacaaattaatcacagcttcgtttctccaa |
52322303 |
T |
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