View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15718_high_12 (Length: 449)
Name: NF15718_high_12
Description: NF15718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15718_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 186 - 445
Target Start/End: Original strand, 3809152 - 3809412
Alignment:
| Q |
186 |
atttgcttgaatgacacattatgcataaagttgaagatgatcagtatgtgccattccctgaagcaaatgactttcaacaattccatatagctacaggtac |
285 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3809152 |
atttgcttgaatgacacat-atgcataaagttgaagatgatcagtatgtgccattccctaaagcaaatgactttcaacaattccatatagctacatgtac |
3809250 |
T |
|
| Q |
286 |
atgtttaaagtagaatgacacatattcttcccttttttgtgccctgttatttttagttgat--atatcaattgaatttcgata-ttttttccctttaatc |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
3809251 |
atgtttaaagtagaatgacacatattcttcccttttttgtg-cttgttatttttagttgataaatatcaattgaatttcgatatttttttccctataatc |
3809349 |
T |
|
| Q |
383 |
ttgtcatgcagactcgttgacaactgaaggaacttccaaaaaacgtcgttttctgaagaatga |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3809350 |
ttgtcatgcagactcgttgacaactgaaggaacttccaaaaaacgtcgttttctgaagaatga |
3809412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3805037 - 3805141
Alignment:
| Q |
1 |
aatgataccacaataccatcaaatgtagaaacacaataccagaacagctcgcttgaagatgaaacaaacagcaccgattctcgctcaaatgaaaatggtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3805037 |
aatgataccacaataccatcaaatgtagaaacacagtaccagaatttttctcttgaagatgaaacaaacagcaccgattcttgctcaaatgaaaatggtg |
3805136 |
T |
|
| Q |
101 |
tgtaa |
105 |
Q |
| |
|
||||| |
|
|
| T |
3805137 |
tgtaa |
3805141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5164901 - 5164866
Alignment:
| Q |
1 |
aatgataccacaataccatcaaatgtagaaacacaa |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5164901 |
aatgataccacaataccatcaaatgtagaaacacaa |
5164866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31742382 - 31742347
Alignment:
| Q |
1 |
aatgataccacaataccatcaaatgtagaaacacaa |
36 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31742382 |
aatgatacaacaataccatcaaatgtagaaacacaa |
31742347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University